RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 AKAP1Q92667 903 aaKnown RBP eCLIP14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 MARVELD3Q96A59 401 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CTHRC1Q96CG8 243 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 WDR92Q96MX6 357 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZFYVE21Q9BQ24 234 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZNF559Q9BR84 538 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ST6GALNAC2Q9UJ37 374 aa14.82□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 EEF1E1O43324 174 aaKnown RBP14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PRKACAP17612 351 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ACSL1P33121 698 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TALDO1P37837 337 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR3A3P47888 321 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TAS2R43P59537 309 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GPR18Q14330 331 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SLC36A2Q495M3 483 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ACSM3Q53FZ2 586 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TEX19Q8NA77 164 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR4C6Q8NH72 309 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 DEDD2Q8WXF8 326 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HSD17B8Q92506 261 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PTCHD1Q96NR3 888 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZNF426Q9BUY5 554 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ABCG5Q9H222 651 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TMEM27Q9HBJ8 222 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 MCCC2Q9HCC0 563 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 NUP50Q9UKX7 468 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 A0A0A6YYJ9 748 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 A0A1B0GWA3 101 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SYNDIG1LA6NDD5 238 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 NKX2-2O95096 273 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 AK1P00568 194 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 DCNP07585 359 aaKnown RBP14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZNF10P21506 573 aaPredicted RBP14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 EMDP50402 254 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 MAB21L1Q13394 359 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 BTBD16Q32M84 506 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 KCTD20Q7Z5Y7 419 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CA13Q8N1Q1 262 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR5H6Q8NGV6 325 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SLC2A12Q8TD20 617 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HOXB13Q92826 284 aaPredicted RBP14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GHSRQ92847 366 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PMM1Q92871 262 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ANKRD9Q96BM1 317 aaPredicted RBP14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CACNG2Q9Y698 323 aa14.81□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CHP2O43745 196 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 FZD7O75084 574 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RASGRP1O95267 797 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 KLF8O95600 359 aaPredicted RBP14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CBX7O95931 251 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PEPDP12955 493 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PYCR1P32322 319 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ACAA2P42765 397 aaKnown RBP14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SRP9P49458 86 aaKnown RBP14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HCCSP53701 268 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 NRG3P56975 720 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SNRPD2P62316 118 aaKnown RBP14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GPLD1P80108 840 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SDE2Q6IQ49 451 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZC3H14Q6PJT7 736 aaKnown RBP14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CADM2Q8N3J6 435 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 C14orf105Q9NVL8 296 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 BAIAP2Q9UQB8 552 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 C19orf67A6NJJ6 358 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 MAGEB4O15481 346 aaPredicted RBP14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HYAL3O43820 417 aaPredicted RBP14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TFP02787 698 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZNF3P17036 446 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GAS6Q14393 721 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PYHIN1Q6K0P9 492 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ARL14Q8N4G2 192 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RSC1A1Q92681 617 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 POLE3Q9NRF9 147 aa14.8□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 FAM25EA8MYX2 175 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 BET1O15155 118 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OGG1O15527 345 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GALR3O60755 368 aaPredicted RBP14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR2B3O76000 313 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 APBB3O95704 486 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RAB3BP20337 219 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 FCN2Q15485 313 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 BICRALQ6AI39 1079 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RTL4Q6ZR62 310 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR52R1Q8NGF1 315 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 BAHD1Q8TBE0 780 aaPredicted RBP14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PATE1Q8WXA2 126 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TTTY10Q9BZA0 68 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SERTAD3Q9UJW9 196 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 NPFFR2Q9Y5X5 522 aa14.79□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 A0A1W2PRG6 482 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TRIM77I1YAP6 450 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ARHGEF9O43307 516 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 IGKV1D-16P01601 117 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 IFI6P09912 130 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HTR2BP41595 481 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ACTC1P68032 377 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ACTA1P68133 377 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 NTRK2Q16620 822 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms