RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	KLK15	Q9H2R5	256 aa		3.82	□□□□□ -1.8
VPS52-222	ENST00000495981	MAP6D1	Q9H9H5	199 aa		3.82	□□□□□ -1.8
VPS52-222	ENST00000495981	PELI2	Q9HAT8	420 aa		3.82	□□□□□ -1.8
VPS52-222	ENST00000495981	PARVB	Q9HBI1	364 aa		3.82	□□□□□ -1.8
VPS52-222	ENST00000495981	ADAP2	Q9NPF8	381 aa		3.82	□□□□□ -1.8
VPS52-222	ENST00000495981	C20orf96	Q9NUD7	363 aa	Predicted RBP	3.82	□□□□□ -1.8
VPS52-222	ENST00000495981	TRMT6	Q9UJA5	497 aa	Known RBP	3.82	□□□□□ -1.8
VPS52-222	ENST00000495981	USF3	Q68DE3	2245 aa		3.82	□□□□□ -1.8
VPS52-222	ENST00000495981	DOCK7	Q96N67	2140 aa		3.82	□□□□□ -1.8
VPS52-222	ENST00000495981		A0A087X1B8	175 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981		A0A0G2JN53	185 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	CYR61	O00622	381 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	PFDN6	O15212	129 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	ST8SIA3	O43173	380 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	OR10H2	O60403	315 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	SCEL	O95171	688 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	RAF1	P04049	648 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	CLPS	P04118	112 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	IGKV3-11	P04433	115 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	SERPINA6	P08185	405 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	CCL3	P10147	92 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	VPREB1	P12018	145 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	PGAM1	P18669	254 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	EPOR	P19235	508 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	AZGP1	P25311	298 aa	Known RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	GABRA5	P31644	462 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	MAGEA5	P43359	124 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	RGS4	P49798	205 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	SSR4	P51571	173 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	RAB38	P57729	211 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	SKP1	P63208	163 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	IGLV3-21	P80748	117 aa	Predicted RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	CCZ1B	P86790	482 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	CCZ1	P86791	482 aa	Predicted RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	MELK	Q14680	651 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	EFNB3	Q15768	340 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	C18orf21	Q32NC0	220 aa	Predicted RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	SLC25A35	Q3KQZ1	300 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	ACSF3	Q4G176	576 aa	Predicted RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	LBH	Q53QV2	105 aa	Predicted RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	C1orf185	Q5T7R7	199 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	GGNBP1	Q5YKI7	109 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	STEAP4	Q687X5	459 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	DUPD1	Q68J44	220 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	NIPAL1	Q6NVV3	410 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	METTL2B	Q6P1Q9	378 aa	Known RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	PODNL1	Q6PEZ8	512 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	ZNF793	Q6ZN11	406 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	TMEM182	Q6ZP80	229 aa	Predicted RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	MTERF4	Q7Z6M4	381 aa	Known RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	C9orf40	Q8IXQ3	194 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	LRRC25	Q8N386	305 aa	Predicted RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	OR5M9	Q8NGP3	310 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	BBS10	Q8TAM1	723 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	ZFAND2B	Q8WV99	257 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	ROBO4	Q8WZ75	1007 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	ST6GALNAC6	Q969X2	333 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	CERS2	Q96G23	380 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	SNF8	Q96H20	258 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	METTL2A	Q96IZ6	378 aa	Known RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	MS4A10	Q96PG2	267 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	SMC6	Q96SB8	1091 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	DEFB126	Q9BYW3	111 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	ZNF350	Q9GZX5	532 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	LIN28A	Q9H9Z2	209 aa	Known RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	CLK4	Q9HAZ1	481 aa	Known RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	PROK2	Q9HC23	129 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	IARS2	Q9NSE4	1012 aa	Known RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	TAS2R13	Q9NYV9	303 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	LEF1	Q9UJU2	399 aa	Predicted RBP	3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	GUCA1B	Q9UMX6	200 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	B3GALT5	Q9Y2C3	310 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	ATG4B	Q9Y4P1	393 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	SACS	Q9NZJ4	4579 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	ROS1	P08922	2347 aa		3.81	□□□□□ -1.8
VPS52-222	ENST00000495981	VWF	P04275	2813 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	SMIM30	A4D0T7	59 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	LRIT2	A6NDA9	550 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	OOEP	A6NGQ2	149 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981		A8MUA0	341 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	NPIPA2	E9PIF3	369 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	NPIPA3	F8WFD2	350 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	KLRC4-KLRK1	H3BQV0	150 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	PSMD12	O00232	456 aa	Predicted RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	CDC7	O00311	574 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	BCKDK	O14874	412 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	T	O15178	435 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ERI3	O43414	337 aa	Known RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	WDR1	O75083	606 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	SEC22B	O75396	215 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	NME6	O75414	186 aa	Predicted RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	B3GALNT1	O75752	331 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	PDE9A	O76083	593 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	NDUFB4	O95168	129 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ETHE1	O95571	254 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	GUCA1C	O95843	209 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	PNP	P00491	289 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	KRT14	P02533	472 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	SERPIND1	P05546	499 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	INHBA	P08476	426 aa		3.8	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 59 ms