RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 PCDHGB4Q9UN71 923 aa11.1□□□□□ -0.63
SKA1-205ENST00000494518 MGAT4BQ9UQ53 548 aa11.1□□□□□ -0.63
SKA1-205ENST00000494518 SLC35A3Q9Y2D2 325 aa11.1□□□□□ -0.63
SKA1-205ENST00000494518 TMED7-TICAM2A0A0A6YYA0 188 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 GOLGA8QA0A0J9YX86 632 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 TMEM72A0PK05 275 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 GOLGA8OA6NCC3 632 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 GOLGA8NF8WBI6 632 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 RNASET2O00584 256 aaKnown RBP11.09□□□□□ -0.63
SKA1-205ENST00000494518 PHF1O43189 567 aaPredicted RBP11.09□□□□□ -0.63
SKA1-205ENST00000494518 CDH2P19022 906 aaPredicted RBP11.09□□□□□ -0.63
SKA1-205ENST00000494518 PTAFRP25105 342 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 CHI3L1P36222 383 aaPredicted RBP11.09□□□□□ -0.63
SKA1-205ENST00000494518 SERPINB5P36952 375 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 KHKP50053 298 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 NME5P56597 212 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 MAD2L1Q13257 205 aaPredicted RBP11.09□□□□□ -0.63
SKA1-205ENST00000494518 PDK3Q15120 406 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 GRINAQ7Z429 371 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 NUDCD3Q8IVD9 361 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 RIBC1Q8N443 379 aaPredicted RBP11.09□□□□□ -0.63
SKA1-205ENST00000494518 ARFGAP2Q8N6H7 521 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 ANKFN1Q8N957 763 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 EIF1ADQ8N9N8 165 aaKnown RBP11.09□□□□□ -0.63
SKA1-205ENST00000494518 WDR31Q8NA23 367 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 TNFRSF13CQ96RJ3 184 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 UPB1Q9UBR1 384 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 MALT1Q9UDY8 824 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 MARCOQ9UEW3 520 aaPredicted RBP11.09□□□□□ -0.63
SKA1-205ENST00000494518 LGALS13Q9UHV8 139 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 TMED7Q9Y3B3 224 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 HDGFL3Q9Y3E1 203 aa11.09□□□□□ -0.63
SKA1-205ENST00000494518 ZC3H12DA2A288 527 aaKnown RBP11.08□□□□□ -0.64
SKA1-205ENST00000494518 ATP6V1G2-DDX39BF2Z307 99 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 GPR171O14626 319 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 ANKRD28O15084 1053 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 SCN2BO60939 215 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 IMPDH2P12268 514 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 UQCRC2P22695 453 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 MAGEA8P43361 318 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 SLC16A1P53985 500 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 KCNJ10P78508 379 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 HPCAP84074 193 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 CHI3L2Q15782 390 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 SYPL1Q16563 259 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 SPANXN4Q5MJ08 99 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 TSPO2Q5TGU0 170 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 SAXO2Q658L1 398 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 IL17RELQ6ZVW7 336 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 HOMEZQ8IX15 550 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 DEPDC4Q8N2C3 294 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 ARIH2OSQ8N7S6 290 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 OR8J2Q8NGG1 315 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 MIPOL1Q8TD10 442 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 NANOS1Q8WY41 292 aaKnown RBP11.08□□□□□ -0.64
SKA1-205ENST00000494518 FAM168AQ92567 244 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 SLC35A5Q9BS91 424 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 INPP5KQ9BT40 448 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 SLC7A10Q9NS82 523 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.08□□□□□ -0.64
SKA1-205ENST00000494518 ASIC5Q9NY37 505 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 TMEM181Q9P2C4 612 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 FLVCR1Q9Y5Y0 555 aa11.08□□□□□ -0.64
SKA1-205ENST00000494518 PRSS51A0A1B0GVH4 220 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 PDLIM1O00151 329 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 HMGN4O00479 90 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 KLF11O14901 512 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 TYROBPO43914 113 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 AGR2O95994 175 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 CHRM4P08173 479 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 NUDT17P0C025 328 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 FAM157CP0CG43 387 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 TACR3P29371 465 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 ETV4P43268 484 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 VSNL1P62760 191 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 VLDLRP98155 873 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 LOXL1Q08397 574 aaPredicted RBP11.07□□□□□ -0.64
SKA1-205ENST00000494518 SSX8Q7RTT4 187 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 RNF130Q86XS8 419 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 PNPT1Q8TCS8 783 aaKnown RBP11.07□□□□□ -0.64
SKA1-205ENST00000494518 C10orf105Q8TEF2 133 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 TMEM158Q8WZ71 300 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 C3orf49Q96BT1 292 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 FBXO17Q96EF6 278 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 NEURL3Q96EH8 262 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 MUS81Q96NY9 551 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 BEX2Q9BXY8 128 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 C20orf27Q9GZN8 174 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 SAP130Q9H0E3 1048 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 CHODLQ9H9P2 273 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 SLC17A5Q9NRA2 495 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 OSGIN1Q9UJX0 560 aa11.07□□□□□ -0.64
SKA1-205ENST00000494518 ELOA3DA6NLF2 546 aaPredicted RBP11.06□□□□□ -0.64
SKA1-205ENST00000494518 C3orf80F5H4A9 247 aa11.06□□□□□ -0.64
SKA1-205ENST00000494518 H7C417 338 aa11.06□□□□□ -0.64
SKA1-205ENST00000494518 GSNP06396 782 aa11.06□□□□□ -0.64
SKA1-205ENST00000494518 IGHV4-31P0DP07 118 aa11.06□□□□□ -0.64
SKA1-205ENST00000494518 SLC25A16P16260 332 aa11.06□□□□□ -0.64
SKA1-205ENST00000494518 POLR2HP52434 150 aaKnown RBP11.06□□□□□ -0.64
SKA1-205ENST00000494518 DSCR9P59020 149 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms