RNA–Protein interactions for RNA: ENST00000493161.1

SAMM50-204, Transcript of SAMM50 sorting and assembly machinery component, human

TSL 3

Gene SAMM50, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SAMM50-204	ENST00000493161	ZHX1-C8orf76	Q96EF9	292 aa		11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	PPP3R2	Q96LZ3	170 aa		11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	TRMO	Q9BU70	441 aa		11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	DUSP26	Q9BV47	211 aa		11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	MECR	Q9BV79	373 aa		11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	BHLHE41	Q9C0J9	482 aa	Predicted RBP	11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	OR51I1	Q9H343	314 aa		11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	ATAD3A	Q9NVI7	634 aa		11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	DCTN4	Q9UJW0	460 aa		11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	AMDHD2	Q9Y303	409 aa		11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	HDGFL3	Q9Y3E1	203 aa		11.95	□□□□□ -0.5
SAMM50-204	ENST00000493161	LRP5L	A4QPB2	252 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	AP3D1	O14617	1153 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	KIAA0513	O60268	411 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	C1QC	P02747	245 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	OR12D1	P0DN82	309 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	IL2RG	P31785	369 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	MAGEA8	P43361	318 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	CR1L	Q2VPA4	569 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	PGS1	Q32NB8	556 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	IQCC	Q4KMZ1	466 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	ATP6AP1L	Q52LC2	224 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	OR4F3	Q6IEY1	312 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	ZCCHC23	Q6ZST2	131 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	C16orf62	Q7Z3J2	963 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	GRINA	Q7Z429	371 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	C17orf78	Q8N4C9	275 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	ZIC4	Q8N9L1	334 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	FNDC5	Q8NAU1	212 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	MNS1	Q8NEH6	495 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	C1orf162	Q8NEQ5	155 aa	Predicted RBP	11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	EPS8L3	Q8TE67	593 aa	Known RBP	11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	SLC35G5	Q96KT7	338 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	VRK1	Q99986	396 aa	Predicted RBP	11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	BPESC1	Q9GZL8	116 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	HEATR1	Q9H583	2144 aa	Known RBP	11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	TMEM181	Q9P2C4	612 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	UPB1	Q9UBR1	384 aa		11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	SPIN1	Q9Y657	262 aa	Predicted RBP	11.94	□□□□□ -0.5
SAMM50-204	ENST00000493161	IGHV1-18	A0A0C4DH31	117 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	RNF103-CHMP3	A0A140T963	221 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	TMEM72	A0PK05	275 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	ZC3H12D	A2A288	527 aa	Known RBP	11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	PRAMEF27	A3QJZ7	478 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	DUXA	A6NLW8	204 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	NDUFS8	O00217	210 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	ANKRD28	O15084	1053 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	SKAP2	O75563	359 aa	Predicted RBP	11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	LYPLA1	O75608	230 aa	Predicted RBP	11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	AK1	P00568	194 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	PGR	P06401	933 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	G6PD	P11413	515 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	ZNF23	P17027	643 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	HNF1A	P20823	631 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	PRPS1L1	P21108	318 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	IDH2	P48735	452 aa	Known RBP	11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	PRPS1	P60891	318 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	LGALS3BP	Q08380	585 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	SLC17A1	Q14916	467 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	FRRS1	Q6ZNA5	592 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	SPATA19	Q7Z5L4	167 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	IFT20	Q8IY31	132 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	NATD1	Q8N6N6	113 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	XAGE5	Q8WWM1	108 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	CNOT9	Q92600	299 aa	Known RBP	11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	ZNF385A	Q96PM9	386 aa	Known RBP	11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	PRPF18	Q99633	342 aa	Known RBP	11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	RHOXF2	Q9BQY4	288 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	SEC61A2	Q9H9S3	476 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	SLC17A7	Q9P2U7	560 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	TRAPPC4	Q9Y296	219 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	FKBP7	Q9Y680	259 aa		11.93	□□□□□ -0.5
SAMM50-204	ENST00000493161	TMED7-TICAM2	A0A0A6YYA0	188 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	LOC390937	A0A1W2PQ73	354 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	WIPF1	O43516	503 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	DNPH1	O43598	174 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	NPHS1	O60500	1241 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	ITGA2	P17301	1181 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	MPG	P29372	298 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	SERPINF1	P36955	418 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	CLK1	P49759	484 aa	Known RBP	11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	SNRPD2	P62316	118 aa	Known RBP	11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	RUNX1T1	Q06455	604 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	SQLE	Q14534	574 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	LIPN	Q5VXI9	398 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	AP1AR	Q63HQ0	302 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	BHLHB9	Q6PI77	547 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	VHLL	Q6RSH7	139 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	SLC46A3	Q7Z3Q1	461 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	MIPOL1	Q8TD10	442 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	ROPN1L	Q96C74	230 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	SAP130	Q9H0E3	1048 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	CA10	Q9NS85	328 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	PARPBP	Q9NWS1	579 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	ZDHHC2	Q9UIJ5	367 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	OSGIN1	Q9UJX0	560 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	SLC35A3	Q9Y2D2	325 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	SLC9A8	Q9Y2E8	581 aa		11.92	□□□□□ -0.5
SAMM50-204	ENST00000493161	TMED7	Q9Y3B3	224 aa		11.92	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms