RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 LOXL1Q08397 574 aaPredicted RBP10.88□□□□□ -0.67
CPSF3-204ENST00000489403 RAB35Q15286 201 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 ELOA3BQ3SY89 546 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 C9orf135Q5VTT2 229 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 OR7E24Q6IFN5 339 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 CASP12Q6UXS9 341 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 ARFGAP2Q8N6H7 521 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 ZNF781Q8N8C0 355 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 WDR31Q8NA23 367 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 ELOA3Q8NG57 546 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 NEURL3Q96EH8 262 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 PKNOX2Q96KN3 472 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 TNFRSF13CQ96RJ3 184 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 INPP5KQ9BT40 448 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 C1QTNF6Q9BXI9 259 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 DPY30Q9C005 99 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 AMBRA1Q9C0C7 1298 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 MANSC1Q9H8J5 431 aa10.88□□□□□ -0.67
CPSF3-204ENST00000489403 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.88□□□□□ -0.67
CPSF3-204ENST00000489403 ALPK2Q86TB3 2170 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 ATRQ13535 2644 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 PRSS51A0A1B0GVH4 220 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 TMEM72A0PK05 275 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 AP3D1O14617 1153 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 IMPDH2P12268 514 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 SLC25A16P16260 332 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 FKBP2P26885 142 aaKnown RBP10.87□□□□□ -0.67
CPSF3-204ENST00000489403 IDH2P48735 452 aaKnown RBP10.87□□□□□ -0.67
CPSF3-204ENST00000489403 CLK1P49759 484 aaKnown RBP10.87□□□□□ -0.67
CPSF3-204ENST00000489403 DSCR9P59020 149 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 H3F3AP84243 136 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 IFFO1Q0D2I5 559 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 CASP8Q14790 479 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 GPAT3Q53EU6 434 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 SPANXN4Q5MJ08 99 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 ZNF544Q6NX49 715 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 NUDCD3Q8IVD9 361 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 DEPDC4Q8N2C3 294 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 CNOT9Q92600 299 aaKnown RBP10.87□□□□□ -0.67
CPSF3-204ENST00000489403 TESCQ96BS2 214 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 SLC35A5Q9BS91 424 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 ROPN1BQ9BZX4 212 aaPredicted RBP10.87□□□□□ -0.67
CPSF3-204ENST00000489403 ROPN1Q9HAT0 212 aaPredicted RBP10.87□□□□□ -0.67
CPSF3-204ENST00000489403 SLC17A5Q9NRA2 495 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 SLC7A10Q9NS82 523 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 TMEM181Q9P2C4 612 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 MARCOQ9UEW3 520 aaPredicted RBP10.87□□□□□ -0.67
CPSF3-204ENST00000489403 DCTN4Q9UJW0 460 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 OSGIN1Q9UJX0 560 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 CDC42EP3Q9UKI2 254 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 TRAPPC4Q9Y296 219 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 FLVCR1Q9Y5Y0 555 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 ATP23Q9Y6H3 246 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 SVEP1Q4LDE5 3571 aa10.87□□□□□ -0.67
CPSF3-204ENST00000489403 PLCE1Q9P212 2302 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 TMED7-TICAM2A0A0A6YYA0 188 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 HMGN4O00479 90 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 CHRM4P08173 479 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 FAM157CP0CG43 387 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 CHI3L1P36222 383 aaPredicted RBP10.86□□□□□ -0.67
CPSF3-204ENST00000489403 HTR3AP46098 478 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 POLR2HP52434 150 aaKnown RBP10.86□□□□□ -0.67
CPSF3-204ENST00000489403 ABCE1P61221 599 aaKnown RBP10.86□□□□□ -0.67
CPSF3-204ENST00000489403 VSNL1P62760 191 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 HPCAP84074 193 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 SLC17A1Q14916 467 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 CHI3L2Q15782 390 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 SYPL1Q16563 259 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 TSPO2Q5TGU0 170 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 ANXA8L1Q5VT79 327 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 C17orf78Q8N4C9 275 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 C1orf162Q8NEQ5 155 aaPredicted RBP10.86□□□□□ -0.67
CPSF3-204ENST00000489403 VPS37AQ8NEZ2 397 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 C10orf105Q8TEF2 133 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 NANOS1Q8WY41 292 aaKnown RBP10.86□□□□□ -0.67
CPSF3-204ENST00000489403 TMEM158Q8WZ71 300 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 FAM168AQ92567 244 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 DDIT4LQ96D03 193 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 C20orf27Q9GZN8 174 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 SLC38A1Q9H2H9 487 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 TMEM160Q9NX00 188 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 UPB1Q9UBR1 384 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 SLC9A8Q9Y2E8 581 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 AMDHD2Q9Y303 409 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 TMED7Q9Y3B3 224 aa10.86□□□□□ -0.67
CPSF3-204ENST00000489403 HEATR1Q9H583 2144 aaKnown RBP10.85□□□□□ -0.67
CPSF3-204ENST00000489403 ZC3H12DA2A288 527 aaKnown RBP10.85□□□□□ -0.67
CPSF3-204ENST00000489403 WDR91A4D1P6 747 aa10.85□□□□□ -0.67
CPSF3-204ENST00000489403 E9PBE3 544 aa10.85□□□□□ -0.67
CPSF3-204ENST00000489403 PHF1O43189 567 aaPredicted RBP10.85□□□□□ -0.67
CPSF3-204ENST00000489403 ZNF208O43345 1280 aa10.85□□□□□ -0.67
CPSF3-204ENST00000489403 EIF1BO60739 113 aaKnown RBP10.85□□□□□ -0.67
CPSF3-204ENST00000489403 LY6HO94772 140 aa10.85□□□□□ -0.67
CPSF3-204ENST00000489403 SERPINE1P05121 402 aa10.85□□□□□ -0.67
CPSF3-204ENST00000489403 IGHV4-31P0DP07 118 aa10.85□□□□□ -0.67
CPSF3-204ENST00000489403 ZNF16P17020 682 aaPredicted RBP10.85□□□□□ -0.67
CPSF3-204ENST00000489403 RPS4Y1P22090 263 aaKnown RBP10.85□□□□□ -0.67
CPSF3-204ENST00000489403 TACR3P29371 465 aa10.85□□□□□ -0.67
CPSF3-204ENST00000489403 SLC35A1P78382 337 aa10.85□□□□□ -0.67
CPSF3-204ENST00000489403 DPY19L1Q2PZI1 675 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms