RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 BOLA3Q53S33 107 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 RAET1GQ6H3X3 334 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 GDPD3Q7L5L3 318 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 FTMTQ8N4E7 242 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 NPBQ8NG41 125 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 SELENOIQ9C0D9 397 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 IFI27L2Q9H2X8 130 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 ECT2Q9H8V3 914 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 ATXN10Q9UBB4 475 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 MGAT4BQ9UQ53 548 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 CLCA3PQ9Y6N3 262 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 KIF26AQ9ULI4 1882 aaPredicted RBP2.51□□□□□ -2.01
PTPN4-212ENST00000488896 ATP10DQ9P241 1426 aa2.51□□□□□ -2.01
PTPN4-212ENST00000488896 A0A0G2JN53 185 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 CCER2I3L3R5 266 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 SS18L1O75177 396 aaPredicted RBP2.5□□□□□ -2.01
PTPN4-212ENST00000488896 MBD3O95983 291 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 FGF9P31371 208 aaPredicted RBP2.5□□□□□ -2.01
PTPN4-212ENST00000488896 SHMT2P34897 504 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 HSPA2P54652 639 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 CSTF1Q05048 431 aaKnown RBP2.5□□□□□ -2.01
PTPN4-212ENST00000488896 CTRB2Q6GPI1 263 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 ZSCAN25Q6NSZ9 544 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 NIPAL3Q6P499 406 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 SLC25A34Q6PIV7 304 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 KIAA1328Q86T90 577 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 C12orf56Q8IXR9 622 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 FGF11Q92914 225 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 MYLPFQ96A32 169 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 GPR61Q9BZJ8 451 aa2.5□□□□□ -2.01
PTPN4-212ENST00000488896 NXF5Q9H1B4 397 aaKnown RBP2.5□□□□□ -2.01
PTPN4-212ENST00000488896 SMPD3Q9NY59 655 aaPredicted RBP2.5□□□□□ -2.01
PTPN4-212ENST00000488896 CARMIL1Q5VZK9 1371 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 A0A0U1RQS6 177 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 B4GALT2O60909 372 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 OR4F21O95013 312 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 FMO3P31513 532 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 ADRA1AP35348 466 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 NUCB2P80303 420 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 CNTN2Q02246 1040 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 GRB7Q14451 532 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 ABCA11PQ4W5N1 156 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 SLC10A5Q5PT55 438 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 KPRPQ5T749 579 aaPredicted RBP2.49□□□□□ -2.01
PTPN4-212ENST00000488896 TIGD3Q6B0B8 471 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 C11orf71Q6IPW1 123 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 DENND6BQ8NEG7 585 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 OR10G3Q8NGC4 313 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 DTX3LQ8TDB6 740 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 C14orf79Q96F83 325 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 ZNF578Q96N58 590 aaPredicted RBP2.49□□□□□ -2.01
PTPN4-212ENST00000488896 P2RY13Q9BPV8 354 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 RIOK1Q9BRS2 568 aaKnown RBP2.49□□□□□ -2.01
PTPN4-212ENST00000488896 CLMPQ9H6B4 373 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 AATFQ9NY61 560 aaKnown RBP eCLIP2.49□□□□□ -2.01
PTPN4-212ENST00000488896 AIPL1Q9NZN9 384 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 MOSPD1Q9UJG1 213 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 B9D1Q9UPM9 204 aa2.49□□□□□ -2.01
PTPN4-212ENST00000488896 MROH7-TTC4A0A0A0MT08 1334 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 FRMPD4Q14CM0 1322 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 IGHV1OR21-1A0A087WYE8 117 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 A0A1B0GUS0 222 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 G3V4G9 280 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 AGPAT2O15120 278 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 MSH4O15457 936 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 ANGPTL7O43827 346 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 TPST2O60704 377 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 ZNF14P17017 642 aaPredicted RBP2.48□□□□□ -2.01
PTPN4-212ENST00000488896 POLR2EP19388 210 aaKnown RBP2.48□□□□□ -2.01
PTPN4-212ENST00000488896 HNF1AP20823 631 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 C5orf47Q569G3 176 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 GPRC6AQ5T6X5 926 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 FRMPD2BQ6IN97 320 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 ZNF836Q6ZNA1 936 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 CAMK2N1Q7Z7J9 78 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 PAQR7Q86WK9 346 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 FAM9BQ8IZU0 186 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 RDH10Q8IZV5 341 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 CCDC54Q8NEL0 328 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 FRZBQ92765 325 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 FCRL1Q96LA6 429 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 C12orf66Q96MD2 445 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 TAAR1Q96RJ0 339 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 ZNF2Q9BSG1 426 aaPredicted RBP2.48□□□□□ -2.01
PTPN4-212ENST00000488896 RHBGQ9H310 441 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 SMYD3Q9H7B4 428 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 CCL28Q9NRJ3 127 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 HEBP2Q9Y5Z4 205 aa2.48□□□□□ -2.01
PTPN4-212ENST00000488896 IQANK1A0A1B0GTG1 560 aa2.47□□□□□ -2.01
PTPN4-212ENST00000488896 TRIM64A6NGJ6 449 aa2.47□□□□□ -2.01
PTPN4-212ENST00000488896 TRIM64BA6NI03 449 aa2.47□□□□□ -2.01
PTPN4-212ENST00000488896 HIP1O00291 1037 aa2.47□□□□□ -2.01
PTPN4-212ENST00000488896 MBTPS2O43462 519 aa2.47□□□□□ -2.01
PTPN4-212ENST00000488896 N4BP1O75113 896 aaKnown RBP2.47□□□□□ -2.01
PTPN4-212ENST00000488896 CTDNEP1O95476 244 aa2.47□□□□□ -2.01
PTPN4-212ENST00000488896 PTBP3O95758 552 aaKnown RBP2.47□□□□□ -2.01
PTPN4-212ENST00000488896 RHOXF2BP0C7M4 288 aa2.47□□□□□ -2.01
PTPN4-212ENST00000488896 CXCL5P42830 114 aa2.47□□□□□ -2.01
PTPN4-212ENST00000488896 DLX1P56177 255 aa2.47□□□□□ -2.01
PTPN4-212ENST00000488896 LY6G6FQ5SQ64 297 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms