RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TMEM41AQ96HV5 264 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 TXNDC15Q96J42 360 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 SLC6A18Q96N87 628 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 MEPEQ9NQ76 525 aaPredicted RBP13.54□□□□□ -0.24
HDAC6-220ENST00000477528 RBFOX1Q9NWB1 397 aaKnown RBP13.54□□□□□ -0.24
HDAC6-220ENST00000477528 MOKQ9UQ07 419 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 ZNF281Q9Y2X9 895 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 NOP16Q9Y3C1 178 aaKnown RBP13.54□□□□□ -0.24
HDAC6-220ENST00000477528 PCDHGA3Q9Y5H0 932 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 M0R082 166 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 SHC1P29353 583 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 HSD17B7P56937 341 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 RIPPLY1Q0D2K3 151 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 RUNX2Q13950 521 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 OR14A16Q8NHC5 309 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 NXPE2Q96DL1 559 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 GIMAP5Q96F15 307 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 ERCC1P07992 297 aaPredicted RBP13.54□□□□□ -0.24
HDAC6-220ENST00000477528 ITGA5P08648 1049 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 DRD5P21918 477 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 HTR3AP46098 478 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 AP2S1P53680 142 aaPredicted RBP13.54□□□□□ -0.24
HDAC6-220ENST00000477528 TLE3Q04726 772 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 GLO1Q04760 184 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 TBC1D25Q3MII6 688 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 SFXN4Q6P4A7 337 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 IL20RBQ6UXL0 311 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 MED25Q71SY5 747 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 ZNF584Q8IVC4 421 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 CELF2-AS1Q8N7Q2 184 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 OR7G1Q8NGA0 311 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 LRRC20Q8TCA0 184 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 ASB12Q8WXK4 309 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 HAVCR1Q96D42 359 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 RSPRY1Q96DX4 576 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 SLC46A1Q96NT5 459 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 OR10A4Q9H209 315 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 B3GAT2Q9NPZ5 323 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 C2orf42Q9NWW7 574 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 MMACHCQ9Y4U1 282 aa13.54□□□□□ -0.24
HDAC6-220ENST00000477528 A0A1B0GVC2 190 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 A6NIN4 97 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 SGCBQ16585 318 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 ZNF764Q96H86 408 aaPredicted RBP13.53□□□□□ -0.24
HDAC6-220ENST00000477528 FGF20Q9NP95 211 aaPredicted RBP13.53□□□□□ -0.24
HDAC6-220ENST00000477528 SLAMF7Q9NQ25 335 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 MGAT4CQ9UBM8 478 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 PLEKHA6Q9Y2H5 1048 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 KNL1Q8NG31 2342 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 LRRC37A2A6NM11 1700 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 SDK1Q7Z5N4 2213 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 LINC01565O15544 149 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 VAMP1P23763 118 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 THOC7Q6I9Y2 204 aaKnown RBP13.53□□□□□ -0.24
HDAC6-220ENST00000477528 CA13Q8N1Q1 262 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 AMER3Q8N944 861 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 NMNAT3Q96T66 252 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 CSF3RQ99062 836 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 TEAD3Q99594 435 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 ALG12Q9BV10 488 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 SLIRPQ9GZT3 109 aaKnown RBP13.53□□□□□ -0.24
HDAC6-220ENST00000477528 MBD2Q9UBB5 411 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 MAB21L2Q9Y586 359 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 KANTRA0A1W2PQU2 76 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 FZD7O75084 574 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 F13BP05160 661 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 CD3GP09693 182 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 CASRP41180 1078 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 AQP2P41181 271 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 CCR5P51681 352 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 EIF2B1Q14232 305 aaKnown RBP13.53□□□□□ -0.24
HDAC6-220ENST00000477528 FAM69AQ5T7M9 428 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 KIAA0907Q7Z7F0 614 aaPredicted RBP13.53□□□□□ -0.24
HDAC6-220ENST00000477528 DIO2Q92813 273 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 LCORQ96JN0 433 aaPredicted RBP13.53□□□□□ -0.24
HDAC6-220ENST00000477528 SLA2Q9H6Q3 261 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 CMC2Q9NRP2 79 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 CDC14CA4D256 554 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 IGHA2P01877 340 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 DAP3P51398 398 aaKnown RBP13.53□□□□□ -0.24
HDAC6-220ENST00000477528 ACTBP60709 375 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 ACTG1P63261 375 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 FAM180AQ6UWF9 173 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 ARHGDIGQ99819 225 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 GPATCH2Q9NW75 528 aa13.53□□□□□ -0.24
HDAC6-220ENST00000477528 ACOT7O00154 380 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 HCRTR1O43613 425 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 SYPP08247 313 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 MAOAP21397 527 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 TACR3P29371 465 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 EMP2P54851 167 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 INO80EQ8NBZ0 244 aaPredicted RBP13.52□□□□□ -0.24
HDAC6-220ENST00000477528 SIMC1Q8NDZ2 872 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 PLA2G2FQ9BZM2 168 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 CST11Q9H112 138 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 KCNK2O95069 426 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 SBK2P0C263 348 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 PTBP1P26599 531 aaKnown RBP eCLIP13.52□□□□□ -0.241e-16■■■■■ 43.3
HDAC6-220ENST00000477528 ZP2Q05996 745 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms