RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SPATA19Q7Z5L4 167 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ANKRD46Q86W74 232 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 CLEC4FQ8N1N0 589 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF610Q8N9Z0 462 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 OR5W2Q8NH69 310 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 RAB3IL1Q8TBN0 382 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 POC1BQ8TC44 478 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 MIPOL1Q8TD10 442 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 GPR119Q8TDV5 335 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 OSTF1Q92882 214 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 CPNE4Q96A23 557 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ARL8AQ96BM9 186 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ZBTB9Q96C00 473 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 REXO5Q96IC2 774 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 MRGPRX4Q96LA9 322 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 KLHL15Q96M94 604 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 KLHDC3Q9BQ90 382 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 MED18Q9BUE0 208 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF350Q9GZX5 532 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 OR51I1Q9H343 314 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 SERHL2Q9H4I8 314 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 PLEKHF2Q9H8W4 249 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 FANCFQ9NPI8 374 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 POLE3Q9NRF9 147 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 PLSCR4Q9NRQ2 329 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 PNPOQ9NVS9 261 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 THAP1Q9NVV9 213 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 NKIRAS1Q9NYS0 192 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 DSCAMO60469 2012 aa6.07□□□□□ -1.44
CCDC88A-213ENST00000476903 ITPR3Q14573 2671 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 RAI1Q7Z5J4 1906 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 SERINC4A6NH21 518 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 SLCO1B7G3V0H7 640 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 SDHDO14521 159 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF195O14628 629 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 ANKRD28O15084 1053 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 HDAC3O15379 428 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 KIAA0513O60268 411 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 FCMRO60667 390 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 SCN2BO60939 215 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 SNNO75324 88 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CYP7B1O75881 506 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CNOT4O95628 575 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CPSF4O95639 269 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CSTAP01040 98 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 GUSBP08236 651 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 PABPC4LP0CB38 370 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 KITP10721 976 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 PPP3CBP16298 524 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CRYGSP22914 178 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CCKARP32238 428 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 S100A3P33764 101 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CHI3L1P36222 383 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 KHKP50053 298 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 ANXA11P50995 505 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CCR4P51679 360 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC18A1P54219 525 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CASP9P55211 416 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 NME5P56597 212 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 MAGOHP61326 146 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 PPP2R2AP63151 447 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 PHC1P78364 1004 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 TXNL4AP83876 142 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 HPCAP84074 193 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 LRRC74AQ0VAA2 488 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 SELENBP1Q13228 472 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CASP8Q14790 479 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 QPRTQ15274 297 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 RNPS1Q15287 305 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 TOMM34Q15785 309 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 ZNF239Q16600 458 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 EXOC3L2Q2M3D2 409 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 NDUFAF6Q330K2 333 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 TMEM176BQ3YBM2 270 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 FAM174BQ3ZCQ3 159 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 SAXO2Q658L1 398 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 HEPHL1Q6MZM0 1159 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 C3orf33Q6P1S2 294 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 TNFAIP8L2Q6P589 184 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 Q8N1Y9 231 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 TRIML2Q8N7C3 387 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 RFWD2Q8NHY2 731 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 MGARPQ8TDB4 240 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 RNF128Q8TEB7 428 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 ZFP90Q8TF47 636 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 XAGE5Q8WWM1 108 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 OIT3Q8WWZ8 545 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 ARSGQ96EG1 525 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 NEURL3Q96EH8 262 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 CCDC115Q96NT0 180 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 WFIKKN1Q96NZ8 548 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 ZBTB18Q99592 522 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 SLC35A5Q9BS91 424 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 KLHL4Q9C0H6 718 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 LAT2Q9GZY6 243 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 AIG1Q9NVV5 245 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 KLHL28Q9NXS3 571 aa6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 C6orf203Q9P0P8 240 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 MARCOQ9UEW3 520 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-213ENST00000476903 BTNL2Q9UIR0 455 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms