RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 SYNGR4O95473 234 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 LGI1O95970 557 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 FESP07332 822 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 PRF1P14222 555 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 UQCRBP14927 111 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 TNFRSF1BP20333 461 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 UQCRC1P31930 480 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 ASCL1P50553 236 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 RGS8P57771 180 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-208ENST00000476739 PSME3P61289 254 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 COPZ1P61923 177 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 LIPEQ05469 1076 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 RIPK1Q13546 671 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 ZSWIM7Q19AV6 140 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 FBXW10Q5XX13 1052 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 OR2A2Q6IF42 318 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 ZNF474Q6S9Z5 364 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-208ENST00000476739 HACD2Q6Y1H2 254 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 FCRLAQ7L513 359 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 FAM214BQ7L5A3 538 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 PATL1Q86TB9 770 aaKnown RBP8.65□□□□□ -1.02
HDAC3-208ENST00000476739 ATG4DQ86TL0 474 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-208ENST00000476739 SLC30A8Q8IWU4 369 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 TUSC5Q8IXB3 177 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 MICU2Q8IYU8 434 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 LSMEM1Q8N8F7 131 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 ANKS4BQ8N8V4 417 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 OR2T12Q8NG77 320 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 OR6T1Q8NGN1 323 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 VANGL1Q8TAA9 524 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-208ENST00000476739 SLC25A43Q8WUT9 341 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-208ENST00000476739 ZFAND2BQ8WV99 257 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 SLC35B4Q969S0 331 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 CPNE4Q96A23 557 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-208ENST00000476739 LRRC37BQ96QE4 947 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 ARHGDIGQ99819 225 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 OPN3Q9H1Y3 402 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-208ENST00000476739 ARMC7Q9H6L4 198 aa8.65□□□□□ -1.02
HDAC3-208ENST00000476739 CACNA1DQ01668 2161 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 A0A1B0GWA3 101 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 ELOVL7A1L3X0 281 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 PRORSD1PA6NEY8 169 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 A8MXE2 369 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 ZNF208O43345 1280 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 SS18L1O75177 396 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 NPIPB7O75200 414 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 DCTN3O75935 186 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 SMNDC1O75940 238 aaKnown RBP eCLIP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 PMS2P2O95744 297 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 THY1P04216 161 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 CRHP06850 196 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 FCGR2AP12318 317 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 PTNP21246 168 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 CXCR1P25024 350 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 EDNRAP25101 427 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 AGTR1P30556 359 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 GSK3BP49841 420 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 RPS6KA3P51812 740 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 SLC25A3Q00325 362 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 EGR4Q05215 589 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 VEZF1Q14119 521 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 OR1Q1Q15612 314 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 NRF1Q16656 503 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 FBXL19-AS1Q494R0 122 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 LRRC23Q53EV4 343 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 INTS11Q5TA45 600 aaKnown RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 GKAP1Q5VSY0 366 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 FAM91A1Q658Y4 838 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 ERICH5Q6P6B1 374 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 MEX3BQ6ZN04 569 aaKnown RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 CCDC121Q6ZUS5 278 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 NUFIP2Q7Z417 695 aaKnown RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 ARPINQ7Z6K5 226 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 P3H2Q8IVL5 708 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 CCDC103Q8IW40 242 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 ZNF295-AS1Q8N0V1 137 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 ZNF610Q8N9Z0 462 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 OR52E4Q8NGH9 312 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 SLC26A7Q8TE54 656 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 RNASE6Q93091 150 aaKnown RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 MARVELD3Q96A59 401 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 ZNF775Q96BV0 537 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 GMPPAQ96IJ6 420 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 ZNF300Q96RE9 604 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 MCHR1Q99705 422 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 HOPXQ9BPY8 73 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 PSD2Q9BQI7 771 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 ALG2Q9H553 416 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 TIGARQ9NQ88 270 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 GALNT8Q9NY28 637 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 KLHL13Q9P2N7 655 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 ABCD2Q9UBJ2 740 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 TESQ9UGI8 421 aaKnown RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 TAGLN3Q9UI15 199 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 HDGFL3Q9Y3E1 203 aa8.64□□□□□ -1.03
HDAC3-208ENST00000476739 SPIN1Q9Y657 262 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-208ENST00000476739 FREM1Q5H8C1 2179 aa8.63□□□□□ -1.03
HDAC3-208ENST00000476739 IGKV1D-42A0A075B6H8 117 aa8.63□□□□□ -1.03
HDAC3-208ENST00000476739 A0A0B4J2E0 115 aa8.63□□□□□ -1.03
HDAC3-208ENST00000476739 A0A1B0GX12 115 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms