RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SCO2O43819 266 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 AIREO43918 545 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 PRKRAO75569 313 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 ATP6AP2O75787 350 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 SC5DO75845 299 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 AP2A2O94973 939 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 BAG3O95817 575 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 TXNDC12O95881 172 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 GAPDHP04406 335 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 OCM2P0CE71 109 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 RNF224P0DH78 156 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 RNH1P13489 461 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 TSPAN8P19075 237 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 PMCHP20382 165 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 PKNOX1P55347 436 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 AP1S2P56377 157 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 PEX3P56589 373 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 CLDN15P56746 228 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 KCNK10P57789 538 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 AP1S1P61966 158 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 FLI1Q01543 452 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 SLC18A2Q05940 514 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 MBTD1Q05BQ5 628 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 IL10RBQ08334 325 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 TMEM132DQ14C87 1099 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 NPTX1Q15818 432 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 DUSP6Q16828 381 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 PAN3Q58A45 887 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 DDI2Q5TDH0 399 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 HIST2H2AA3Q6FI13 130 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 RGMBQ6NW40 437 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 NPSR1Q6W5P4 371 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 PQLC2Q6ZP29 291 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 IDO2Q6ZQW0 420 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF554Q86TJ5 538 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 CCDC190Q86UF4 302 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 AMIGO1Q86WK6 493 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 STK40Q8N2I9 435 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 PARP16Q8N5Y8 322 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 CNBD1Q8NA66 436 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 INO80EQ8NBZ0 244 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 OR52E5Q8NH55 327 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 FAM110BQ8TC76 370 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 CDS1Q92903 461 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 SLC35C1Q96A29 364 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 S100PBPQ96BU1 408 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 CMTM5Q96DZ9 223 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 PRMT6Q96LA8 375 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 JSRP1Q96MG2 331 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 TSSK2Q96PF2 358 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 SLC38A2Q96QD8 506 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 SLC22A12Q96S37 553 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 NIPSNAP1Q9BPW8 284 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 TRMT61BQ9BVS5 477 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 C1QTNF4Q9BXJ3 329 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 SLC2A11Q9BYW1 496 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 DPAGT1Q9H3H5 408 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 PLGRKTQ9HBL7 147 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 CYSLTR2Q9NS75 346 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF446Q9NWS9 450 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 BABAM2Q9NXR7 383 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 LHX3Q9UBR4 397 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 PADI3Q9ULW8 664 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 MEMO1Q9Y316 297 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 RAP2CQ9Y3L5 183 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 POLR3HQ9Y535 204 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 RIPK3Q9Y572 518 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 NME7Q9Y5B8 376 aa4.28□□□□□ -1.72
CCDC88A-210ENST00000468534 SCN5AQ14524 2016 aa4.28□□□□□ -1.73
CCDC88A-210ENST00000468534 KIF24Q5T7B8 1368 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PNPLA6Q8IY17 1366 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 TNRQ92752 1358 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 ANKRD30BQ9BXX2 1392 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 UBN2Q6ZU65 1347 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 TRBV7-9A0A0J9YWB2 115 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 F8VVB4 439 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 F8VWA3 439 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 M0R296 226 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 DPM1O60762 260 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 SUPT3HO75486 399 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 OXSR1O95747 527 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 LDOC1O95751 146 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 EGFP01133 1207 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 IGHV2-70P01814 119 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 TCRBP04435 133 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 CRHP06850 196 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 APRTP07741 180 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 ZDHHC11BP0C7U3 371 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PET100P0DJ07 73 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 ICAM2P13598 275 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 ETFAP13804 333 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 HTR2CP28335 458 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 GABRR2P28476 465 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 C21orf33P30042 268 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC1A1P43005 524 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 RPL21P46778 160 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PRELPP51888 382 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 PLA2G16P53816 162 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 TAS2R60P59551 318 aa4.27□□□□□ -1.73
CCDC88A-210ENST00000468534 RAB10P61026 200 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms