RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 TSPAN10Q9H1Z9 355 aaPredicted RBP10.81□□□□□ -0.68
CPSF3-202ENST00000460593 BCL2L10Q9HD36 194 aa10.81□□□□□ -0.68
CPSF3-202ENST00000460593 MED9Q9NWA0 146 aa10.81□□□□□ -0.68
CPSF3-202ENST00000460593 PURGQ9UJV8 347 aaKnown RBP10.81□□□□□ -0.68
CPSF3-202ENST00000460593 ARPC4-TTLL3A0A0A6YYG9 625 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 A0A0G2JPF8 293 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 A0A1W2PR48 441 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 HNRNPCL3B7ZW38 293 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 F5H5P2 479 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 F8W036 122 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 HNRNPCL4P0DMR1 293 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 LIPCP11150 499 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 CBR1P16152 277 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 BMP7P18075 431 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 RECQLP46063 649 aaPredicted RBP10.8□□□□□ -0.68
CPSF3-202ENST00000460593 SOX2P48431 317 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 UBXN2BQ14CS0 331 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 DECR1Q16698 335 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 ODF4Q2M2E3 257 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 GXYLT1Q4G148 440 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 TMEM215Q68D42 235 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 PUSL1Q8N0Z8 303 aaKnown RBP10.8□□□□□ -0.68
CPSF3-202ENST00000460593 SDR9C7Q8NEX9 313 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 NUP43Q8NFH3 380 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 GRHL3Q8TE85 626 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 DUSP19Q8WTR2 217 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 CDS1Q92903 461 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 CAMK1GQ96NX5 476 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 C1QTNF2Q9BXJ5 285 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 MRPL17Q9NRX2 175 aaKnown RBP10.8□□□□□ -0.68
CPSF3-202ENST00000460593 SLC25A13Q9UJS0 675 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 LSM7Q9UK45 103 aaKnown RBP10.8□□□□□ -0.68
CPSF3-202ENST00000460593 HS3ST2Q9Y278 367 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 KLF2Q9Y5W3 355 aaPredicted RBP10.8□□□□□ -0.68
CPSF3-202ENST00000460593 MYO7AQ13402 2215 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 SCAMP1O15126 338 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 LATO43561 262 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 ASGR2P07307 311 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 CYBAP13498 195 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 F3P13726 295 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 NTSP30990 170 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 LUMP51884 338 aaPredicted RBP10.8□□□□□ -0.68
CPSF3-202ENST00000460593 ART1P52961 327 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 POLR2LP62875 67 aaKnown RBP10.8□□□□□ -0.68
CPSF3-202ENST00000460593 SNRPNP63162 240 aaKnown RBP10.8□□□□□ -0.68
CPSF3-202ENST00000460593 UBE2IP63279 158 aaKnown RBP10.8□□□□□ -0.68
CPSF3-202ENST00000460593 FGL1Q08830 312 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 GAREM2Q75VX8 874 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 LDLRAD3Q86YD5 345 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 ZNF461Q8TAF7 563 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 NANPQ8TBE9 248 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 OVCA2Q8WZ82 227 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 NSMAFQ92636 917 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 TMEM185BQ9H7F4 350 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 MED17Q9NVC6 651 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 COA4Q9NYJ1 87 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 PLEKHM1Q9Y4G2 1056 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 DENND4CQ5VZ89 1909 aa10.8□□□□□ -0.68
CPSF3-202ENST00000460593 TRAV20A0A0B4J274 112 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 DISC1C4P0D8 188 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 GABARAPH6UMI1 98 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 PRAMEF2O60811 474 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 FAM209BQ5JX69 171 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 SLC16A13Q7RTY0 426 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 MCATQ8IVS2 390 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 OR4N5Q8IXE1 308 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 OR4K13Q8NH42 304 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 C2orf15Q8WU43 125 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 UBE2E3Q969T4 207 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 SLC35A4Q96G79 324 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 HS6ST2Q96MM7 605 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 CD180Q99467 661 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 TSNAXQ99598 290 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 PRSS27Q9BQR3 290 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 TMEM231Q9H6L2 316 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 GPN1Q9HCN4 374 aaPredicted RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 FBXO34Q9NWN3 711 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 CLDND1Q9NY35 253 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 SLC23A2Q9UGH3 650 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 A0A1B0GVT2 93 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 A0A1W2PRU2 124 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 ANKRD20A5PA0PJZ0 165 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 TMEM200CA6NKL6 621 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 KPNA3O00505 521 aaPredicted RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 PRICKLE3O43900 615 aaPredicted RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 LILRB5O75023 590 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 STX11O75558 287 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 NDUFB6O95139 128 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 AKR7A3O95154 331 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 SRMP19623 302 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 HTR2AP28223 471 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 SRSF3P84103 164 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 TCEA2Q15560 299 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 TMEM44Q2T9K0 475 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 HFEQ30201 348 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 PCGF3Q3KNV8 242 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 C9orf131Q5VYM1 1079 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 B3GNTL1Q67FW5 361 aaPredicted RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 OR4C11Q6IEV9 310 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 HAGHLQ6PII5 290 aaPredicted RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms