RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 PLEKHF2Q9H8W4 249 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 ZNF226Q9NYT6 803 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 C6orf203Q9P0P8 240 aaPredicted RBP11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 TMEM181Q9P2C4 612 aa11.32□□□□□ -0.6
PRPF40A-203ENST00000448428 TACC2O95359 2948 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 ZNF716A6NP11 495 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 DEFB108AA8MXU0 73 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 DNPH1O43598 174 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 TPST1O60507 370 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 RAMP1O60894 148 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 GCM2O75603 506 aaPredicted RBP11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 THBDP07204 575 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 FPR1P21462 350 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 CRYGSP22914 178 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 SLC6A2P23975 617 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 EDNRAP25101 427 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 PRKAR1BP31321 381 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 MDH1P40925 334 aaKnown RBP11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 OR3A2P47893 321 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 IST1P53990 364 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 COPZ1P61923 177 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 H3F3AP84243 136 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 BNIP2Q12982 314 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 NFYCQ13952 458 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 PDK3Q15120 406 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 COMTD1Q86VU5 262 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 CXorf67Q86X51 503 aaPredicted RBP11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 KRT73Q86Y46 540 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 PTOV1Q86YD1 416 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 CCDC103Q8IW40 242 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 GABRG1Q8N1C3 465 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 SLC35B4Q969S0 331 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 ZHX1-C8orf76Q96EF9 292 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 FANCFQ9NPI8 374 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 SAR1AQ9NR31 198 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 ST6GALNAC2Q9UJ37 374 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 GPR52Q9Y2T5 361 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 ABCA4P78363 2273 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 POLQO75417 2590 aa11.31□□□□□ -0.6
PRPF40A-203ENST00000448428 PRR14LQ5THK1 2151 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 IGKV3D-15A0A087WSY6 115 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 ATP8B1O43520 1251 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 ADAP00813 363 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 PPP3CBP16298 524 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 PSMB1P20618 241 aaKnown RBP11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 AQP1P29972 269 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 NTF4P34130 210 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 MTPNP58546 118 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 SLC35A1P78382 337 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 KLF10Q13118 480 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 CAPRIN1Q14444 709 aaKnown RBP11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 TESK1Q15569 626 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 TSC22D1Q15714 1073 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 GLIPR1L2Q4G1C9 344 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 ABLIM2Q6H8Q1 611 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 DHRS4L2Q6PKH6 230 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 GALNT5Q7Z7M9 940 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 HIPK4Q8NE63 616 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 ZNF317Q96PQ6 595 aaPredicted RBP11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 SPATA5L1Q9BVQ7 753 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 HDHD5Q9BXW7 423 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 POTEKPQ9BYX7 375 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 ACTR6Q9GZN1 396 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 KAT8Q9H7Z6 458 aaKnown RBP11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 PRSS50Q9UI38 385 aa11.3□□□□□ -0.6
PRPF40A-203ENST00000448428 SPG11Q96JI7 2443 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 ANKRD17O75179 2603 aaKnown RBP11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 AKAP6Q13023 2319 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 LIPT2A6NK58 231 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 A8MVM7 634 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 EIF1BO60739 113 aaKnown RBP11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 MFN2O95140 757 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 LOXP28300 417 aaPredicted RBP11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 SLC16A1P53985 500 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 DMTNQ08495 405 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 RBBP4Q09028 425 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 CEACAM7Q14002 265 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 P2RY6Q15077 328 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 CYP51A1Q16850 503 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 SFRP5Q5T4F7 317 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 NANOGP8Q6NSW7 305 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 ATG4DQ86TL0 474 aaPredicted RBP11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 ZNF100Q8IYN0 542 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 C11orf65Q8NCR3 313 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 PIGXQ8TBF5 258 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 NINJ1Q92982 152 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 C3orf49Q96BT1 292 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 PIK3IP1Q96FE7 263 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 ZNF607Q96SK3 696 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 WFDC6Q9BQY6 131 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 NAA11Q9BSU3 229 aaPredicted RBP11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 PRR14Q9BWN1 585 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 NANOGQ9H9S0 305 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 CCM2LQ9NUG4 571 aaPredicted RBP11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 EMC3Q9P0I2 261 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 KLHL14Q9P2G3 628 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 PLEKHA6Q9Y2H5 1048 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 CSMD1Q96PZ7 3565 aa11.29□□□□□ -0.6
PRPF40A-203ENST00000448428 MYO9AB2RTY4 2548 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms