RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 OTX2P32243 289 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 AIF1P55008 147 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 AQP5P55064 265 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 LINC01547P58512 204 aaPredicted RBP3.53□□□□□ -1.84
VPS29-202ENST00000447578 RPL10AP62906 217 aaKnown RBP3.53□□□□□ -1.84
VPS29-202ENST00000447578 HERVK_113P63132 956 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ERVK-8P63133 956 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 CSNK2BP67870 215 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 MRPS6P82932 125 aaKnown RBP3.53□□□□□ -1.84
VPS29-202ENST00000447578 GPM6BQ13491 265 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 NAB1Q13506 487 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 PRPSAP1Q14558 356 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 FCN2Q15485 313 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 TEAD2Q15562 447 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ANKRD55Q3KP44 614 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 POM121L1PQ3SYA9 428 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 RFTN2Q52LD8 501 aaPredicted RBP3.53□□□□□ -1.84
VPS29-202ENST00000447578 TEX44Q53QW1 395 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 FAM72AQ5TYM5 149 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ASPHD2Q6ICH7 369 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 FAM72DQ6L9T8 149 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 RFWD3Q6PCD5 774 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 DPY19L2P2Q6ZN68 376 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 Q6ZRG5 221 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ZCCHC23Q6ZST2 131 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 CYS1Q717R9 158 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 FAM72BQ86X60 149 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 KRTAP7-1Q8IUC3 87 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 LACC1Q8IV20 430 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 DND1Q8IYX4 353 aaKnown RBP3.53□□□□□ -1.84
VPS29-202ENST00000447578 SLC22A15Q8IZD6 547 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 TMEM86AQ8N2M4 240 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 NPWQ8N729 165 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 DNAAF3Q8N9W5 541 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 RELL2Q8NC24 303 aaPredicted RBP3.53□□□□□ -1.84
VPS29-202ENST00000447578 DDHD1Q8NEL9 900 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 OR5T2Q8NGG2 359 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 OR52K1Q8NGK4 314 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 RAB3IL1Q8TBN0 382 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 RDH11Q8TC12 318 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ACMSDQ8TDX5 336 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 GATAD1Q8WUU5 269 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ZNRF4Q8WWF5 429 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ARNTL2Q8WYA1 636 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 NT5C3BQ969T7 300 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 MYLPFQ96A32 169 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 MRPL24Q96A35 216 aaKnown RBP3.53□□□□□ -1.84
VPS29-202ENST00000447578 NTAN1Q96AB6 310 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 MCUR1Q96AQ8 359 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 CERS2Q96G23 380 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 SMARCD1Q96GM5 515 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ATXN7L3BQ96GX2 97 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 CELF6Q96J87 481 aaKnown RBP3.53□□□□□ -1.84
VPS29-202ENST00000447578 C4orf36Q96KX1 117 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 RILPQ96NA2 401 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 RAB40CQ96S21 281 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 APOL2Q9BQE5 337 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 MTG1Q9BT17 334 aaPredicted RBP3.53□□□□□ -1.84
VPS29-202ENST00000447578 NAT9Q9BTE0 207 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ERVK-6Q9BXR3 956 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 NMUR2Q9GZQ4 415 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 SLC25A19Q9HC21 320 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 DDIT4Q9NX09 232 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 TMEM216Q9P0N5 145 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ARMCX1Q9P291 453 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 DCDC2Q9UHG0 476 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 CDH9Q9ULB4 789 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 KLHDC2Q9Y2U9 406 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 C15orf41Q9Y2V0 281 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 SLC6A5Q9Y345 797 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 Q9Y3F1 56 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 WIPI2Q9Y4P8 454 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 MYH9P35579 1960 aaKnown RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 ZSWIM8A7E2V4 1837 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 MEI4A8MW99 385 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 WASH3PC4AMC7 463 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 HHLA1C9JL84 531 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 K7EQM0 130 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 DFFAO00273 331 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 SURF4O15260 269 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 PLIN3O60664 434 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 SNNO75324 88 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 ENTPD5O75356 428 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 LYPLA1O75608 230 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 ZNF189O75820 626 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 CIB2O75838 187 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 B3GAT3O94766 335 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 AP2A2O94973 939 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 NADKO95544 446 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 AP2A1O95782 977 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 ANGPTL1O95841 491 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 HPRP00739 348 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 JCHAINP01591 159 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 CHRNA1P02708 482 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 SERPINE1P05121 402 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 FCER2P06734 321 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 RPL9P32969 192 aaKnown RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 SPRP35270 261 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 BRCC3P46736 316 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 LEPRP48357 1165 aaKnown RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms