RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 STEAP1BQ6NZ63 245 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 FBXW12Q6X9E4 464 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 ASPGQ86U10 573 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 ZNF680Q8NEM1 530 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 PHOSPHO1Q8TCT1 267 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 OR7D2Q96RA2 312 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 ZNF391Q9UJN7 358 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 hCG_1809904A0A1W2PP81 198 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 A0A1W2PPE2 198 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 A0A1W2PR64 198 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 A0A1W2PRV1 198 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 GPR32O75388 356 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 MT-ATP6P00846 226 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 PRDX3P30048 256 aaKnown RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 OR1D2P34982 312 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SGCBQ16585 318 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 PGGHGQ32M88 737 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SYS1Q8N2H4 156 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 PGBD5Q8N414 524 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SLC5A8Q8N695 610 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 CELF5Q8N6W0 485 aaKnown RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 OR9I1Q8NGQ6 314 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 GAL3ST4Q96RP7 486 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 DPH1Q9BZG8 443 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 LHX6Q9UPM6 363 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 LAMB1P07942 1786 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 BLOC1S5-TXNDC5H3BN57 136 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 STAG3L3P0CL85 134 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 NHSL2Q5HYW2 709 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 PABPC1L2AQ5JQF8 200 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 MANEAQ5SRI9 462 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 KIAA0895LQ68EN5 471 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 TMEM151AQ8N4L1 468 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 OR1S2Q8NGQ3 325 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SARDHQ9UL12 918 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SLC7A7Q9UM01 511 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SOX1O00570 391 aaPredicted RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 TNFP01375 233 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SERPINA5P05154 406 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 ITGB8P26012 769 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 FABP6P51161 128 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 REEP5Q00765 189 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 ADIRFQ15847 76 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 MOGAT2Q3SYC2 334 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 UNC50Q53HI1 259 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 KDM4DQ6B0I6 523 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 RD3Q7Z3Z2 195 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 KCNE4Q8WWG9 221 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 POT1Q9NUX5 634 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 CPA4Q9UI42 421 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 PI4KAP42356 2102 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 TMX2-CTNND1H3BSU7 103 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SNRNP70P08621 437 aaKnown RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 LRRC37A5PQ49AS3 106 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 FUT10Q6P4F1 479 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 MCATQ8IVS2 390 aaKnown RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 GJD4Q96KN9 370 aaPredicted RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 TEX101Q9BY14 249 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SLC39A9Q9NUM3 307 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 FOXD2O60548 495 aaPredicted RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 PFKMP08237 780 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 C6P13671 934 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 AQP2P41181 271 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 CSNK1DP48730 415 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 DGKZQ13574 1117 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 CTF1Q16619 201 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 Q3ZCU0 254 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SYNPRQ8TBG9 265 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 HERVK_113Q902F9 699 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 DUSP21Q9H596 190 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SIRT7Q9NRC8 400 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 PLEKHJ1Q9NW61 149 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 GPR45Q9Y5Y3 372 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 ARGFXA6NJG6 315 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 IL3RAP26951 378 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 GLYR1Q49A26 553 aaPredicted RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 WBP2NLQ6ICG8 309 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 APOOLQ6UXV4 268 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 LMNTD1Q8N9Z9 388 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 LIN28AQ9H9Z2 209 aaKnown RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 DDX4Q9NQI0 724 aaKnown RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 OTOFQ9HC10 1997 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 CICQ96RK0 1608 aaPredicted RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 SURF4O15260 269 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SMAD6O43541 496 aaKnown RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 C6orf47O95873 294 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 H2AFB1P0C5Y9 115 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 RABEPKQ7Z6M1 372 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 ARHGEF39Q8N4T4 335 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 COPS9Q8WXC6 57 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 ZNF582Q96NG8 517 aaPredicted RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 LRRC3BQ96PB8 259 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 TXNDC17Q9BRA2 123 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SIDT1Q9NXL6 827 aaKnown RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 PIRTP0C851 137 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 FPR3P25089 353 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 COL19A1Q14993 1142 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 LY6KQ17RY6 165 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 ARRDC1Q8N5I2 433 aa6.73□□□□□ -1.33
VPS53-204ENST00000437048 EDEM2Q9BV94 578 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms