RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 KPNA4O00629 521 aaPredicted RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 AQP7O14520 342 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 EIF1AYO14602 144 aaKnown RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 FFAR1O14842 300 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 BCKDKO14874 412 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 SEC14L5O43304 696 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 EIF1BO60739 113 aaKnown RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 MT-ATP6P00846 226 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 IFI30P13284 250 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 DLX5P56178 289 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 SLC35A1P78382 337 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 IL1RL1Q01638 556 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 BCL2A1Q16548 175 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ANKDD1AQ495B1 522 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 FAM69AQ5T7M9 428 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 C1orf140Q5VVS0 124 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 PPP4R4Q6NUP7 873 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ZBTB49Q6ZSB9 765 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 TRILQ7L0X0 811 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 MAMDC2Q7Z304 686 aaPredicted RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 ZNF605Q86T29 641 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ADGRG3Q86Y34 549 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 NKAIN4Q8IVV8 208 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 UBQLNLQ8IYU4 475 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 OR10G2Q8NGC3 310 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 OR4K5Q8NGD3 323 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 OR5M1Q8NGP8 315 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 TMEM255BQ8WV15 326 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 FAR1Q8WVX9 515 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 SLC25A36Q96CQ1 311 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 DHRS1Q96LJ7 313 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 KLHL15Q96M94 604 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 PKP2Q99959 881 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 RBM4BQ9BQ04 359 aaKnown RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 WFDC6Q9BQY6 131 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 RBM4Q9BWF3 364 aaKnown RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 SLC6A15Q9H2J7 730 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 TMEM185BQ9H7F4 350 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 NANSQ9NR45 359 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 CAMK2AQ9UQM7 478 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 SLC6A5Q9Y345 797 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ZNF337Q9Y3M9 751 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ZNF407Q9C0G0 2248 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 EFCAB9A8MZ26 197 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 H3BNX3 289 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ADAM10O14672 748 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ATXN7O15265 892 aaPredicted RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 ADAM11O75078 769 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ATP6V1G2O95670 118 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 IGF2P01344 180 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 IGHG3P01860 377 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ABOP16442 354 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 RPS5P46782 204 aaKnown RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 SLC9A3P48764 834 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 RAD23AP54725 363 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 CARD18P57730 90 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 OR2B6P58173 313 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 PLAURQ03405 335 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 SRYQ05066 204 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 NFATC3Q12968 1075 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 OTUD3Q5T2D3 398 aaPredicted RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 HBMQ6B0K9 141 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 GTF2IRD2BQ6EKJ0 949 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 RPL13AP3Q6NVV1 102 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 GTF2IRD2Q86UP8 949 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 NRMQ8IXM6 262 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 OR6S1Q8NH40 331 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 SLC7A13Q8TCU3 470 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 BPIFA2Q96DR5 249 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 GPR137Q96N19 417 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 TSPAN10Q9H1Z9 355 aaPredicted RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 MCTS1Q9ULC4 181 aaKnown RBP9.12□□□□□ -0.95
CD44-207ENST00000425428 TRAPPC4Q9Y296 219 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 CORINQ9Y5Q5 1042 aa9.12□□□□□ -0.95
CD44-207ENST00000425428 ZFHX4Q86UP3 3567 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 GTF3C1Q12789 2109 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 A0A087WUU8 490 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 TRBV4-1A0A0J9YWV2 114 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 SAC3D1A6NKF1 404 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 SHISA8B8ZZ34 492 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 PRRG2O14669 202 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 DNPH1O43598 174 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 RCBTB2O95199 551 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 NTN1O95631 604 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 BMP7P18075 431 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 PTGS2P35354 604 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 EIF1AXP47813 144 aaKnown RBP9.11□□□□□ -0.95
CD44-207ENST00000425428 GFRA1P56159 465 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 PRKCDQ05655 676 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 COX10Q12887 443 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 SNCBQ16143 134 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 RFX4Q33E94 735 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 CMPK2Q5EBM0 449 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 NHSL2Q5HYW2 709 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 GFRALQ6UXV0 394 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 LINC00114Q6XXX2 140 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 P4HA3Q7Z4N8 544 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 OAFQ86UD1 273 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 MCEMP1Q8IX19 187 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 AQP11Q8NBQ7 271 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms