RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 LIPKQ5VXJ0 399 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ZDHHC21Q8IVQ6 265 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 SLC30A8Q8IWU4 369 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 TMEM125Q96AQ2 219 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 MISP3Q96FF7 219 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 FUZQ9BT04 418 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ZNF350Q9GZX5 532 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 C6orf106Q9H6K1 298 aaPredicted RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 BRF2Q9HAW0 419 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 TEX10Q9NXF1 929 aaPredicted RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 COMMD9Q9P000 198 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 PRSS21Q9Y6M0 314 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 LTBP2Q14767 1821 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 UBFD1O14562 309 aaKnown RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 EEF1E1O43324 174 aaKnown RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 C1orf105O95561 183 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ANXA2P07355 339 aaKnown RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 IGFALSP35858 605 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 OR4D2P58180 307 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 EIF5AP63241 154 aaKnown RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 NKX6-1P78426 367 aaPredicted RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 KIAA0141Q14154 515 aaPredicted RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 HNF4GQ14541 408 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 LAPTM4AQ15012 233 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 PINK1Q9BXM7 581 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 CACNG6Q9BXT2 260 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 RNF32Q9H0A6 362 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 KIR3DX1Q9H7L2 352 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ACSS1Q9NUB1 689 aaPredicted RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 GRHPRQ9UBQ7 328 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 PCTPQ9UKL6 214 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 SLC17A4Q9Y2C5 497 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 IGLV3-16A0A075B6K0 115 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 A0A0J9YY10 115 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 SMCO3A2RU48 225 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 M0R143 59 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 CXCR6O00574 342 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 GPX5O75715 221 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 AKR7A3O95154 331 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 DCNP07585 359 aaKnown RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 CD81P60033 236 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 RPE65Q16518 533 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 BATFQ16520 125 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 GGTA1PQ4G0N0 100 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 GCNT6Q5T4J0 391 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 METRNLQ641Q3 311 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 METAP1DQ6UB28 335 aaPredicted RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 NRROSQ86YC3 692 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 C15orf54Q8N8G6 183 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 L3MBTL4Q8NA19 623 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 OR56B2PQ8NGI1 322 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 OR10D4PQ8NGN7 298 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 OR2G2Q8NGZ5 317 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 OR52E6Q96RD3 313 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ATOH8Q96SQ7 321 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 LGR4Q9BXB1 951 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 SLC6A16Q9GZN6 736 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 GAL3ST2Q9H3Q3 398 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 NANSQ9NR45 359 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 DLL4Q9NR61 685 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 DHCR7Q9UBM7 475 aaKnown RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 MYO18AQ92614 2054 aaKnown RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 SLC5A10A0PJK1 596 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ELOVL7A1L3X0 281 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ZNF705GA8MUZ8 300 aaPredicted RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 TMEM150CB9EJG8 249 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 PCDH7O60245 1069 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 GKN3PP0CG01 181 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 PRSS56P0CW18 603 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 MAGEB1P43366 347 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 TFF2Q03403 129 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 LIN54Q6MZP7 749 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 PTCHD4Q6ZW05 846 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 NAXDQ8IW45 347 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 TMEFF1Q8IYR6 380 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 OR11H7Q8NGC8 314 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 KCNC2Q96PR1 638 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 MAPKAP1Q9BPZ7 522 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ZNF471Q9BX82 626 aaPredicted RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 ANGPT4Q9Y264 503 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 TCRBV5S2A0A599 114 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 BLACEA4D250 179 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 M0R082 166 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 PLA2G10O15496 165 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 RGS9O75916 674 aaPredicted RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 AKR1C2P52895 323 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 AKR1C1Q04828 323 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 AMZ1Q400G9 498 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 PYCR3Q53H96 274 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 ATG9BQ674R7 924 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 SLC25A24Q6NUK1 477 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 ENPP6Q6UWR7 440 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 ZNF621Q6ZSS3 439 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 C2orf73Q8N5S3 287 aaPredicted RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 TRIM2Q9C040 744 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 FTSJ1Q9UET6 329 aa9.1□□□□□ -0.95
USP54-205ENST00000424265 CFAP20Q9Y6A4 193 aaKnown RBP9.1□□□□□ -0.95
USP54-205ENST00000424265 MEIKINA0A087WXM9 373 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms