RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 RNFT1Q5M7Z0 435 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 ANKRD34AQ69YU3 496 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 YRDCQ86U90 279 aaKnown RBP12.87□□□□□ -0.35
SF3B1-204ENST00000414963 CDK20Q8IZL9 346 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 PARP8Q8N3A8 854 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 ATG16L2Q8NAA4 619 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 OR14L1PQ8NHC6 308 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 SLC25A43Q8WUT9 341 aaPredicted RBP12.87□□□□□ -0.35
SF3B1-204ENST00000414963 SLC39A7Q92504 469 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 BPIFA2Q96DR5 249 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 CRELD1Q96HD1 420 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 UBL7Q96S82 380 aaPredicted RBP12.87□□□□□ -0.35
SF3B1-204ENST00000414963 ZNF556Q9HAH1 456 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 C20orf141Q9NUB4 165 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 PCNX3Q9H6A9 2034 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 ACACBO00763 2458 aa12.87□□□□□ -0.35
SF3B1-204ENST00000414963 TRAV36DV7A0A075B6V5 113 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 SHISA8B8ZZ34 492 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 DLGAP1O14490 977 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 PIP5K1CO60331 668 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 FZD7O75084 574 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 TRAPPC6AO75865 159 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 IFI30P13284 250 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 GSTM3P21266 225 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 RFC3P40938 356 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 MAGEA5P43359 124 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 RAC1P63000 192 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 TOMM20Q15388 145 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 RFX4Q33E94 735 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 PLEKHN1Q494U1 663 aaPredicted RBP12.86□□□□□ -0.35
SF3B1-204ENST00000414963 C1orf140Q5VVS0 124 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 RAET1LQ5VY80 246 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 C3orf33Q6P1S2 294 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 GALNT4Q8N4A0 578 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 OR5M1Q8NGP8 315 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 PFN4Q8NHR9 129 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 MAGEE2Q8TD90 523 aaPredicted RBP12.86□□□□□ -0.35
SF3B1-204ENST00000414963 PNPLA2Q96AD5 504 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 DDIT4LQ96D03 193 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 KTI12Q96EK9 354 aaPredicted RBP12.86□□□□□ -0.35
SF3B1-204ENST00000414963 SGTBQ96EQ0 304 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 GPA33Q99795 319 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 NIPSNAP1Q9BPW8 284 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 ARHGAP9Q9BRR9 750 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 UCK2Q9BZX2 261 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 LHX6Q9UPM6 363 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 POFUT2Q9Y2G5 429 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 RPH3AQ9Y2J0 694 aaPredicted RBP12.86□□□□□ -0.35
SF3B1-204ENST00000414963 ZNF337Q9Y3M9 751 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 AP4B1Q9Y6B7 739 aa12.86□□□□□ -0.35
SF3B1-204ENST00000414963 LAMA5O15230 3695 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 TNRC6AQ8NDV7 1962 aaKnown RBP12.85□□□□□ -0.35
SF3B1-204ENST00000414963 ZC3H12DA2A288 527 aaKnown RBP12.85□□□□□ -0.35
SF3B1-204ENST00000414963 ENO4A6NNW6 628 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 FAM166BA8MTA8 275 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 OR2T1O43869 369 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 MT-ATP6P00846 226 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 SFTPCP11686 197 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 CCNA2P20248 432 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 MAKP20794 623 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 IGFBP5P24593 272 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 RAD23AP54725 363 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 ALDH6A1Q02252 535 aaKnown RBP12.85□□□□□ -0.35
SF3B1-204ENST00000414963 CRYZQ08257 329 aaKnown RBP12.85□□□□□ -0.35
SF3B1-204ENST00000414963 ZNF74Q16587 644 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 SYT14P1Q58G82 188 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 NHSL2Q5HYW2 709 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 WIPI1Q5MNZ9 446 aaPredicted RBP12.85□□□□□ -0.35
SF3B1-204ENST00000414963 C1QL3Q5VWW1 255 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 SLC6A19Q695T7 634 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 POMZP3Q6PJE2 187 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 P3H2Q8IVL5 708 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 SIAH3Q8IW03 269 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 MFSD8Q8NHS3 518 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 TAAR8Q969N4 342 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 GTPBP3Q969Y2 492 aaKnown RBP12.85□□□□□ -0.35
SF3B1-204ENST00000414963 FAM46AQ96IP4 442 aaKnown RBP12.85□□□□□ -0.35
SF3B1-204ENST00000414963 TAAR6Q96RI8 345 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 PTDSS2Q9BVG9 487 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 MFRPQ9BY79 579 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 PAPOLBQ9NRJ5 636 aaKnown RBP12.85□□□□□ -0.35
SF3B1-204ENST00000414963 KIF17Q9P2E2 1029 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 REV1Q9UBZ9 1251 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 ENOPH1Q9UHY7 261 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 TRAPPC4Q9Y296 219 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 HDGFL3Q9Y3E1 203 aa12.85□□□□□ -0.35
SF3B1-204ENST00000414963 ZZEF1O43149 2961 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 DSPP15924 2871 aaKnown RBP12.84□□□□□ -0.35
SF3B1-204ENST00000414963 GJE1A6NN92 205 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 EFCAB9A8MZ26 197 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 FTCDNL1E5RQL4 147 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 E9PQ18 207 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 KPNA4O00629 521 aaPredicted RBP12.84□□□□□ -0.35
SF3B1-204ENST00000414963 CDC42EP2O14613 210 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 HCN1O60741 890 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 PTP4A3O75365 173 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 OR7A10O76100 309 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 AHSA1O95433 338 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 ACTL6AO96019 429 aa12.84□□□□□ -0.35
SF3B1-204ENST00000414963 IGHG3P01860 377 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms