RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 SLC35A1P78382 337 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 GTF3C1Q12789 2109 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 MYBPHQ13203 477 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 DUSP7Q16829 419 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 TMEM201Q5SNT2 666 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 ATG4DQ86TL0 474 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-206ENST00000414829 STK32CQ86UX6 486 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 KIF18BQ86Y91 864 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 FITM2Q8N6M3 262 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 CNEP1R1Q8N9A8 125 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 OR6K3Q8NGY3 331 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 NSL1Q96IY1 281 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 NAA11Q9BSU3 229 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-206ENST00000414829 PCDHAC1Q9H158 963 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 ARL8BQ9NVJ2 186 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 MAGEL2Q9UJ55 1249 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 RPS6KA6Q9UK32 745 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 NCKAP5O14513 1909 aa13.11□□□□□ -0.31
LIMS1-206ENST00000414829 DIDO1Q9BTC0 2240 aaKnown RBP13.11□□□□□ -0.31
LIMS1-206ENST00000414829 A0A1B0GWA3 101 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 A0A1W2PNR3 127 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 TMEM229AB2RXF0 380 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 CXCR6O00574 342 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 FRS3O43559 492 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 OR2T1O43869 369 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 TPST1O60507 370 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 GCM2O75603 506 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-206ENST00000414829 AQP8O94778 261 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 PRKD3O94806 890 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 OPN1LWP04000 364 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 HSD17B1P14061 328 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 GTF2E2P29084 291 aaKnown RBP13.1□□□□□ -0.31
LIMS1-206ENST00000414829 PCYT1AP49585 367 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 MFSD13AQ14CX5 517 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 PDK3Q15120 406 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 CYBRD1Q53TN4 286 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 TRPM8Q7Z2W7 1104 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 GPR32P1Q8NGA4 272 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 GEMIN6Q8WXD5 167 aaKnown RBP13.1□□□□□ -0.31
LIMS1-206ENST00000414829 RNASE6Q93091 150 aaKnown RBP13.1□□□□□ -0.31
LIMS1-206ENST00000414829 POP5Q969H6 163 aaKnown RBP13.1□□□□□ -0.31
LIMS1-206ENST00000414829 SLC38A4Q969I6 547 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 FAM162AQ96A26 154 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 ZNF524Q96C55 264 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 MPP4Q96JB8 637 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 MCHR1Q99705 422 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 SRXN1Q9BYN0 137 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 KLHL13Q9P2N7 655 aa13.1□□□□□ -0.31
LIMS1-206ENST00000414829 SPTAN1Q13813 2472 aaKnown RBP13.1□□□□□ -0.31
LIMS1-206ENST00000414829 A0A0B4J2E0 115 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 A0A1B0GX12 115 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 TMEM72A0PK05 275 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 TRAPPC13A5PLN9 417 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 KDM4EB2RXH2 506 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-206ENST00000414829 M0R3H8 397 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 GPR171O14626 319 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 HNRNPRO43390 633 aaKnown RBP13.09□□□□□ -0.31
LIMS1-206ENST00000414829 CHP2O43745 196 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 CYTIPO60759 359 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 TNFSF13O75888 250 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 THRBP10828 461 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 CD8BP10966 210 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 COX6B1P14854 86 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 CCNA2P20248 432 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 HTR2AP28223 471 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 AGFG1P52594 562 aaKnown RBP13.09□□□□□ -0.31
LIMS1-206ENST00000414829 OR2B6P58173 313 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 SELENOWP63302 87 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 SORDQ00796 357 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 BNIP2Q12982 314 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 GUSBP1Q15486 140 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 OR1Q1Q15612 314 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 GLIPR1L2Q4G1C9 344 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 C1orf140Q5VVS0 124 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 ABLIM2Q6H8Q1 611 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 PAQR6Q6TCH4 344 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 RELL2Q8NC24 303 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-206ENST00000414829 OR6T1Q8NGN1 323 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 OR6S1Q8NH40 331 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 ARL5BQ96KC2 179 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 SPOCK3Q9BQ16 436 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 OR11A1Q9GZK7 315 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 PROCRQ9UNN8 238 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 SAMD4AQ9UPU9 718 aaKnown RBP13.09□□□□□ -0.31
LIMS1-206ENST00000414829 SH3GLB1Q9Y371 365 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 SPTBN1Q01082 2364 aaKnown RBP13.09□□□□□ -0.31
LIMS1-206ENST00000414829 MYO7BQ6PIF6 2116 aa13.09□□□□□ -0.31
LIMS1-206ENST00000414829 NCOA6Q14686 2063 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-206ENST00000414829 A0A087WUJ7 227 aa13.08□□□□□ -0.32
LIMS1-206ENST00000414829 ZNF724A8MTY0 619 aa13.08□□□□□ -0.32
LIMS1-206ENST00000414829 SMNDC1O75940 238 aaKnown RBP eCLIP13.08□□□□□ -0.32
LIMS1-206ENST00000414829 VAMP5O95183 116 aa13.08□□□□□ -0.32
LIMS1-206ENST00000414829 GGT1P19440 569 aa13.08□□□□□ -0.32
LIMS1-206ENST00000414829 HOXC5Q00444 222 aa13.08□□□□□ -0.32
LIMS1-206ENST00000414829 TFF3Q07654 80 aa13.08□□□□□ -0.32
LIMS1-206ENST00000414829 FAM69AQ5T7M9 428 aa13.08□□□□□ -0.32
LIMS1-206ENST00000414829 CARM1Q86X55 608 aa13.08□□□□□ -0.32
LIMS1-206ENST00000414829 DEFB107AQ8IZN7 70 aa13.08□□□□□ -0.32
LIMS1-206ENST00000414829 MFSD8Q8NHS3 518 aa13.08□□□□□ -0.32
LIMS1-206ENST00000414829 VANGL1Q8TAA9 524 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms