RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SOX2P48431 317 aa19.33■□□□□ 0.68
CTCF-202ENST00000401394 ANXA11P50995 505 aaKnown RBP19.33■□□□□ 0.68
CTCF-202ENST00000401394 ARHGEF6Q15052 776 aa19.33■□□□□ 0.68
CTCF-202ENST00000401394 LINC00303Q3SY05 128 aa19.33■□□□□ 0.68
CTCF-202ENST00000401394 HEPHL1Q6MZM0 1159 aa19.33■□□□□ 0.68
CTCF-202ENST00000401394 MTSS1LQ765P7 747 aa19.33■□□□□ 0.68
CTCF-202ENST00000401394 BMP8AQ7Z5Y6 402 aa19.33■□□□□ 0.68
CTCF-202ENST00000401394 FAM98AQ8NCA5 519 aaKnown RBP19.33■□□□□ 0.68
CTCF-202ENST00000401394 SMARCD2Q92925 531 aa19.33■□□□□ 0.68
CTCF-202ENST00000401394 SLC25A38Q96DW6 304 aa19.33■□□□□ 0.68
CTCF-202ENST00000401394 STARD5Q9NSY2 213 aa19.33■□□□□ 0.68
CTCF-202ENST00000401394 CXorf51AA0A1B0GTR3 108 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 FAM86C2PA6NEL3 165 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 FMO6PO60774 539 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 IFNA7P01567 189 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 CT62P0C5K7 136 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 SLC2A5P22732 501 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 CLLU1Q5K131 121 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 TMEM81Q6P7N7 255 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 SLC39A5Q6ZMH5 540 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 SFTPA2Q8IWL1 248 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 KLHL15Q96M94 604 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 GSX2Q9BZM3 304 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 PRSS16Q9NQE7 514 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 DPP7Q9UHL4 492 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 SCP2D1Q9UJQ7 156 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 KCNMB2Q9Y691 235 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 PEX14O75381 377 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 GNRH1P01148 92 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 EDNRAP25101 427 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 NANOS3P60323 173 aaKnown RBP19.32■□□□□ 0.68
CTCF-202ENST00000401394 TRA2BP62995 288 aaKnown RBP19.32■□□□□ 0.68
CTCF-202ENST00000401394 GAB4Q2WGN9 574 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 YOD1Q5VVQ6 348 aaPredicted RBP19.32■□□□□ 0.68
CTCF-202ENST00000401394 OR6K6Q8NGW6 343 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 HGDQ93099 445 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 NMNAT3Q96T66 252 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 B3GNT4Q9C0J1 378 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 PCBD2Q9H0N5 130 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 PHF11Q9UIL8 331 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 RPN2P04844 631 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 HOXD4P09016 255 aaPredicted RBP19.32■□□□□ 0.68
CTCF-202ENST00000401394 GAAP10253 952 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 NT5EP21589 574 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 FAM199XQ6PEV8 388 aaPredicted RBP19.32■□□□□ 0.68
CTCF-202ENST00000401394 ASPGQ86U10 573 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 LRRC25Q8N386 305 aaPredicted RBP19.32■□□□□ 0.68
CTCF-202ENST00000401394 SLAIN1Q8ND83 568 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 GAL3ST1Q99999 423 aa19.32■□□□□ 0.68
CTCF-202ENST00000401394 MRPS23Q9Y3D9 190 aaKnown RBP19.32■□□□□ 0.68
CTCF-202ENST00000401394 RIIAD1A6NNX1 92 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 ATP6V1G2-DDX39BF2Z307 99 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 EMDP50402 254 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 NRG3P56975 720 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 DGAT2L6Q6ZPD8 337 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 ZNF765Q7L2R6 523 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 NRROSQ86YC3 692 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 SRFBP1Q8NEF9 429 aaKnown RBP19.31■□□□□ 0.68
CTCF-202ENST00000401394 OR56B4Q8NH76 319 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 KCTD12Q96CX2 325 aaKnown RBP19.31■□□□□ 0.68
CTCF-202ENST00000401394 RNF208Q9H0X6 261 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 DEC1Q9P2X7 70 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 PCDHGA9Q9Y5G4 932 aaKnown RBP19.31■□□□□ 0.68
CTCF-202ENST00000401394 EDDM13A0A1B0GTR0 161 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 SLC22A31A6NKX4 558 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 ARPC5O15511 151 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 RNGTTO60942 597 aaKnown RBP19.31■□□□□ 0.68
CTCF-202ENST00000401394 BDH1Q02338 343 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 FHL1Q13642 323 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 FAM53BQ14153 422 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 TMEM35AQ53FP2 167 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 DCST2Q5T1A1 773 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 TMIEQ8NEW7 156 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 OR4D10Q8NGI6 311 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 SNX33Q8WV41 574 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 IER3IP1Q9Y5U9 82 aa19.31■□□□□ 0.68
CTCF-202ENST00000401394 MCIDASD6RGH6 385 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 KHDRBS3O75525 346 aaKnown RBP19.3■□□□□ 0.68
CTCF-202ENST00000401394 SHC2P98077 582 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 PRSS42Q7Z5A4 293 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 UBE2Q1Q7Z7E8 422 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 ETFBKMTQ8IXQ9 262 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 OR5M1Q8NGP8 315 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 SMIM4Q8WVI0 70 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 LIN7BQ9HAP6 207 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 MCCC2Q9HCC0 563 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 NTMQ9P121 344 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 SLC35A3Q9Y2D2 325 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 H0YC42 278 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 CTSVO60911 334 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 LPLP06858 475 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 PVRP15151 417 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 GABRA3P34903 492 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 RAB14P61106 215 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 HTR4Q13639 388 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 TMEM52BQ4KMG9 183 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 ADAMTSL4Q6UY14 1074 aa19.3■□□□□ 0.68
CTCF-202ENST00000401394 RANBP3LQ86VV4 465 aaPredicted RBP19.3■□□□□ 0.68
CTCF-202ENST00000401394 ZNF707Q96C28 371 aaPredicted RBP19.3■□□□□ 0.68
CTCF-202ENST00000401394 MS4A4EQ96PG1 132 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms