RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ADA2Q9NZK5 511 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 B3GAT1Q9P2W7 334 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 RIMS3Q9UJD0 308 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 DKKL1Q9UK85 242 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 NCOR2Q9Y618 2525 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 CEP295Q9C0D2 2601 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 NUP214P35658 2090 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 GTPBP1O00178 669 aaKnown RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 MGRN1O60291 552 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 CYP7B1O75881 506 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 FABP3P05413 133 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 CBLP22681 906 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 TACR3P29371 465 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 TRAM2Q15035 370 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 RNPS1Q15287 305 aaKnown RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 NRN1LQ496H8 165 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 COLEC12Q5KU26 742 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 WIPI1Q5MNZ9 446 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 C1QL3Q5VWW1 255 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 GALNT10Q86SR1 603 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 RBM45Q8IUH3 476 aaKnown RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 C10orf67Q8IYJ2 551 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF808Q8N4W9 903 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 CLPTM1LQ96KA5 538 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 DDOQ99489 341 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 TUBA1CQ9BQE3 449 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 TSPAN10Q9H1Z9 355 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 PLSCR4Q9NRQ2 329 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 STOML1Q9UBI4 398 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF629Q9UEG4 869 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 RCE1Q9Y256 329 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 RASD1Q9Y272 281 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 TMEM5Q9Y2B1 443 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 IGSF10Q6WRI0 2623 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 M0R3H8 397 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 SMAD9O15198 467 aaKnown RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 HNRNPRO43390 633 aaKnown RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 OR2T1O43869 369 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF432O94892 652 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 TOXO94900 526 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 VAMP5O95183 116 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 MT-ND1P03886 318 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 GLI4P10075 376 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 FCGR2AP12318 317 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 NCK1P16333 377 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 PAX7P23759 505 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 FPR3P25089 353 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 SHC1P29353 583 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 SLC35A1P78382 337 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 RIPK1Q13546 671 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 GXYLT1Q4G148 440 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 SHQ1Q6PI26 577 aaKnown RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 VTCN1Q7Z7D3 282 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 PARP8Q8N3A8 854 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 CISD2Q8N5K1 135 aaKnown RBP6.28□□□□□ -1.4
LIMA1-202ENST00000394943 ADAMTS16Q8TE57 1224 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 SRXN1Q9BYN0 137 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 TMEM27Q9HBJ8 222 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 KLHL1Q9NR64 748 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 SERINC1Q9NRX5 453 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 B3GALT5Q9Y2C3 310 aa6.28□□□□□ -1.4
LIMA1-202ENST00000394943 PTPRZ1P23471 2315 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 A0A1B0GTH9 108 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 TNFSF13O75888 250 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 OR7A10O76100 309 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 FCGR1AP12314 374 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 HPGDP15428 266 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 IDUAP35475 653 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 GPR85P60893 370 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 CSNK2A1P68400 391 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 RBPJQ06330 500 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 SGCBQ16585 318 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 PDSS1Q5T2R2 415 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 FAM69AQ5T7M9 428 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 OR2A2Q6IF42 318 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 HMBOX1Q6NT76 420 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 FAM162AQ96A26 154 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 GMPPAQ96IJ6 420 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 TM9SF2Q99805 663 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 SFXN3Q9BWM7 321 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 DNAJB9Q9UBS3 223 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 CACNA1GO43497 2377 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 DHRS12A0PJE2 317 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 MS4A18H0YCH9 400 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 FKBP6O75344 327 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 UBTFL6P0CB48 400 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 PTGS2P35354 604 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 UGT2B15P54855 530 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 RGS8P57771 180 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 ADORA2A-AS1P86434 159 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 PLGLB1Q02325 96 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 SLC17A1Q14916 467 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 ZSCAN26Q16670 478 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 MS4A18Q3C1V0 323 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 FAM98BQ52LJ0 330 aaKnown RBP6.27□□□□□ -1.41
LIMA1-202ENST00000394943 C1orf140Q5VVS0 124 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 SZRD1Q7Z422 152 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 MEIOBQ8N635 442 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 ZIC4Q8N9L1 334 aa6.27□□□□□ -1.41
LIMA1-202ENST00000394943 MAGEE2Q8TD90 523 aaPredicted RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms