RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 TLR9Q9NR96 1032 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 NCDNQ9UBB6 729 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 WIF1Q9Y5W5 379 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 LRP5LA4QPB2 252 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 TP53I11O14683 189 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 COCHO43405 550 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 FKTNO75072 461 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 SLC1A3P43003 542 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 PER3P56645 1201 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 SLC35G1Q2M3R5 365 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 SLX4IPQ5VYV7 408 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 MAP6Q96JE9 813 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 RBM24Q9BX46 236 aaKnown RBP11.09□□□□□ -0.63
SYNPO-202ENST00000394243 TMEM231Q9H6L2 316 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 TAF9BQ9HBM6 251 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 RPH3ALQ9UNE2 315 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 TRIM77I1YAP6 450 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 DBHP09172 617 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 HLA-DOBP13765 273 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 ATPAF1Q5TC12 328 aaPredicted RBP11.09□□□□□ -0.63
SYNPO-202ENST00000394243 STEAP1BQ6NZ63 245 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 RPL22L1Q6P5R6 122 aaKnown RBP11.09□□□□□ -0.63
SYNPO-202ENST00000394243 DEFB132Q7Z7B7 95 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 ABHD4Q8TB40 342 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 DAZLQ92904 295 aaKnown RBP11.09□□□□□ -0.63
SYNPO-202ENST00000394243 ATP13A2Q9NQ11 1180 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 SPHK1Q9NYA1 384 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 SNX11Q9Y5W9 270 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 KPTNQ9Y664 436 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 SPEF2Q9C093 1822 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 AKR7A2O43488 359 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF43P17038 809 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 MAOBP27338 520 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 PIGAP37287 484 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 MTNR1BP49286 362 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 PRSS45Q7RTY3 260 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 ABHD12BQ7Z5M8 362 aaPredicted RBP11.09□□□□□ -0.63
SYNPO-202ENST00000394243 OR2A25A4D2G3 310 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 HOXC11O43248 304 aaPredicted RBP11.08□□□□□ -0.63
SYNPO-202ENST00000394243 LATO43561 262 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 GJB5O95377 273 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 ARSAP15289 507 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 NME1P15531 152 aaKnown RBP11.08□□□□□ -0.63
SYNPO-202ENST00000394243 PTGER1P34995 402 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 RPS19P39019 145 aaKnown RBP11.08□□□□□ -0.63
SYNPO-202ENST00000394243 LMAN2Q12907 356 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 SHEQ5VZ18 495 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 HSD17B11Q8NBQ5 300 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 OR5M8Q8NGP6 311 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 GHSRQ92847 366 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 PEX11GQ96HA9 241 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 NRIP3Q9NQ35 241 aa11.08□□□□□ -0.63
SYNPO-202ENST00000394243 ZFP92A6NM28 416 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 ARRB1P49407 418 aaPredicted RBP11.08□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF239Q16600 458 aaKnown RBP11.08□□□□□ -0.64
SYNPO-202ENST00000394243 KIAA0319Q5VV43 1072 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 RANBP10Q6VN20 620 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 NDUFAF7Q7L592 441 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 SSX7Q7RTT5 188 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 RDH10Q8IZV5 341 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 MTMR14Q8NCE2 650 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 BMFQ96LC9 184 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 FKRPQ9H9S5 495 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 ACTL7AQ9Y615 435 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 PRAMEF27A3QJZ7 478 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 EIF3FO00303 357 aaPredicted RBP11.08□□□□□ -0.64
SYNPO-202ENST00000394243 DCTN6O00399 190 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 HLA-HP01893 362 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 HMGCLP35914 325 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 GPR18Q14330 331 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 C3orf38Q5JPI3 329 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 TOR2AQ5JU69 321 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 PRAMEF9Q5VWM5 478 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 SEMA6DQ8NFY4 1073 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 ELOVL3Q9HB03 270 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 ANTXRLA6NF34 631 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 M0QYG6 137 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 LEFTY2O00292 366 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 SEC14L5O43304 696 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 TRHRP34981 398 aaPredicted RBP11.08□□□□□ -0.64
SYNPO-202ENST00000394243 TMEM217Q8N7C4 229 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 MSI2Q96DH6 328 aaKnown RBP11.08□□□□□ -0.64
SYNPO-202ENST00000394243 RAB3CQ96E17 227 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 SUCNR1Q9BXA5 334 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 DMRT3Q9NQL9 472 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 B4DXG7 233 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 VEGFDO43915 354 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 EFNA3P52797 238 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 AANATQ16613 207 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 NLGN4XQ8N0W4 816 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 OR52I1Q8NGK6 324 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 RNF167Q9H6Y7 350 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 CAMK2AQ9UQM7 478 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 TMEM221A6NGB7 291 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 USP2O75604 605 aaPredicted RBP11.08□□□□□ -0.64
SYNPO-202ENST00000394243 MT-ND4LP03901 98 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 GDI1P31150 447 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 NPBWR1P48145 328 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 LY6G5CQ5SRR4 150 aa11.08□□□□□ -0.64
SYNPO-202ENST00000394243 VRK2Q86Y07 508 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms