RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TCEANCQ8N8B7 351 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 COX18Q8N8Q8 333 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 MDS2Q8NDY4 140 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 GNPDA2Q8TDQ7 276 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 SLC39A7Q92504 469 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 PMM1Q92871 262 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 RPL3LQ92901 407 aaKnown RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 LGALS12Q96DT0 336 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 C5orf34Q96MH7 638 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 G6PC3Q9BUM1 346 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.31□□□□□ -0.92
VPS53-202ENST00000389040 NXF5Q9H1B4 397 aaKnown RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 KLF13Q9Y2Y9 288 aaPredicted RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 RPL36Q9Y3U8 105 aaKnown RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 OR10H1Q9Y4A9 318 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 EFCAB9A8MZ26 197 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 KLRC4-KLRK1H3BQV0 150 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 AIREO43918 545 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 KIAA0513O60268 411 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 STX11O75558 287 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 NEURL1O76050 574 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 OR5F1O95221 314 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 DBIP07108 87 aaKnown RBP9.3□□□□□ -0.92
VPS53-202ENST00000389040 ADRA2AP08913 450 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 RPS4Y1P22090 263 aaKnown RBP9.3□□□□□ -0.92
VPS53-202ENST00000389040 GIPRP48546 466 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 SERPINB10P48595 397 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 PCYT1AP49585 367 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 BMXP51813 675 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 SMSP52788 366 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 CDK5Q00535 292 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 ZNF155Q12901 538 aaPredicted RBP9.3□□□□□ -0.92
VPS53-202ENST00000389040 TSPAN31Q12999 210 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 GPR68Q15743 365 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 OCLNQ16625 522 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 DGUOKQ16854 277 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.3□□□□□ -0.92
VPS53-202ENST00000389040 MEDAGQ5VYS4 303 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 SLC22A10Q63ZE4 541 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 FCRLBQ6BAA4 426 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 SLC25A25Q6KCM7 469 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 LYPD8Q6UX82 237 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 PRICKLE2Q7Z3G6 844 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 SLC46A3Q7Z3Q1 461 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 GDF7Q7Z4P5 450 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 KIF18BQ86Y91 864 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 POGLUT1Q8NBL1 392 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 FAM98AQ8NCA5 519 aaKnown RBP9.3□□□□□ -0.92
VPS53-202ENST00000389040 PIGXQ8TBF5 258 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 TEX47Q8TBZ9 253 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 DYNC2LI1Q8TCX1 351 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 GPR151Q8TDV0 419 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 PAQR8Q8TEZ7 354 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 ACOT11Q8WXI4 607 aaPredicted RBP9.3□□□□□ -0.92
VPS53-202ENST00000389040 PIK3R3Q92569 461 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 TMCO6Q96DC7 493 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 SCMH1Q96GD3 660 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 SLC41A3Q96GZ6 507 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 MCHR1Q99705 422 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 POLDIP3Q9BY77 421 aaKnown RBP9.3□□□□□ -0.92
VPS53-202ENST00000389040 SAP130Q9H0E3 1048 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 SH2D2AQ9NP31 389 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 TAS2R16Q9NYV7 291 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 TVP23BQ9NYZ1 205 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 CBLCQ9ULV8 474 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 NTNG1Q9Y2I2 539 aa9.3□□□□□ -0.92
VPS53-202ENST00000389040 CACNA1BQ00975 2339 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 KMT2BQ9UMN6 2715 aaPredicted RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 CENPVL1A0A0U1RR11 272 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 PRKYO43930 277 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 SLC25A12O75746 678 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 SNX4O95219 450 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 IL33O95760 270 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 PDGFAP04085 211 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 SP1P08047 785 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 GADD45AP24522 165 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 SOX3P41225 446 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 OMPP47874 163 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 PLCXD2Q0VAA5 305 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 ARMCX4Q5H9R4 360 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 SLC25A30Q5SVS4 291 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 LINC00299Q6ZSB3 139 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 RRM2BQ7LG56 351 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 RANBP3LQ86VV4 465 aaPredicted RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 MEX3DQ86XN8 651 aaKnown RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 TOR1AIP2Q8NFQ8 470 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 TMEM80Q96HE8 168 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 FAM46AQ96IP4 442 aaKnown RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 PLA2G12AQ9BZM1 189 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 HOXD1Q9GZZ0 328 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 EGLN3Q9H6Z9 239 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 ZBTB20Q9HC78 741 aaPredicted RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 ZNF71Q9NQZ8 489 aaPredicted RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 POLE3Q9NRF9 147 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 TBC1D23Q9NUY8 699 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 DTX4Q9Y2E6 619 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 K7EM74 188 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 TLX2O43763 284 aaPredicted RBP9.29□□□□□ -0.92
VPS53-202ENST00000389040 NME2P1O60361 137 aa9.29□□□□□ -0.92
VPS53-202ENST00000389040 NTN1O95631 604 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms