RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 POU2F3Q9UKI9 436 aa11.34□□□□□ -0.59
VRK3-202ENST00000377011 ASB4Q9Y574 426 aa11.34□□□□□ -0.59
VRK3-202ENST00000377011 A0A1W2PR48 441 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 FAM47E-STBD1D6RA91 191 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 CCNKO75909 580 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 SOX14O95416 240 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 OR12D1P0DN82 309 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 PTGER1P34995 402 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 GPC1P35052 558 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 GIPRP48546 466 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 PSPHP78330 225 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 INPP5JQ15735 1006 aaPredicted RBP11.33□□□□□ -0.6
VRK3-202ENST00000377011 SYT14P1Q58G82 188 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 NDUFAF5Q5TEU4 345 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 MRM1Q6IN84 353 aaKnown RBP11.33□□□□□ -0.6
VRK3-202ENST00000377011 HSDL2Q6YN16 418 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 TMPRSS11AQ6ZMR5 421 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 PHC2Q8IXK0 858 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 BEST3Q8N1M1 668 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 APCDD1LQ8NCL9 501 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 MORN4Q8NDC4 146 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 OR4K5Q8NGD3 323 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 GNPDA2Q8TDQ7 276 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 ELP5Q8TE02 316 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 CNPPD1Q9BV87 410 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 RSPO3Q9BXY4 272 aaPredicted RBP11.33□□□□□ -0.6
VRK3-202ENST00000377011 TRIM45Q9H8W5 580 aaPredicted RBP11.33□□□□□ -0.6
VRK3-202ENST00000377011 NEK6Q9HC98 313 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 EXOSC4Q9NPD3 245 aaKnown RBP11.33□□□□□ -0.6
VRK3-202ENST00000377011 ZCCHC3Q9NUD5 404 aaKnown RBP11.33□□□□□ -0.6
VRK3-202ENST00000377011 ASF1BQ9NVP2 202 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 EXOSC1Q9Y3B2 195 aaKnown RBP11.33□□□□□ -0.6
VRK3-202ENST00000377011 PCDHGB7Q9Y5F8 929 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 PTPN13Q12923 2485 aa11.33□□□□□ -0.6
VRK3-202ENST00000377011 PRAMEF27A3QJZ7 478 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 CENPBD1B2RD01 187 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 CTDSP2O14595 271 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 PRODHO43272 600 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 NR2F6P10588 404 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 ACP2P11117 423 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 SPNP16150 400 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 MYL12AP19105 171 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 RPS19P39019 145 aaKnown RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 RPS5P46782 204 aaKnown RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 OR2B6P58173 313 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 SYPL1Q16563 259 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 ZNF750Q32MQ0 723 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 H3F3CQ6NXT2 135 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 FAM180BQ6P0A1 224 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 ZER1Q7Z7L7 766 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 UBQLNLQ8IYU4 475 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 SRFBP1Q8NEF9 429 aaKnown RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 TOR1AIP2Q8NFQ8 470 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 OR52I1Q8NGK6 324 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 TMEM163Q8TC26 289 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 CPT1CQ8TCG5 803 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 THAP3Q8WTV1 239 aaPredicted RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 PTPMT1Q8WUK0 201 aaPredicted RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 SLC25A46Q96AG3 418 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 ZNF582Q96NG8 517 aaPredicted RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 SIGLEC12Q96PQ1 595 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 BBS4Q96RK4 519 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 LPAR4Q99677 370 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 COQ7Q99807 217 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 MAN2C1Q9NTJ4 1040 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 CLEC2DQ9UHP7 191 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 ZNF221Q9UK13 617 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 LIPT1Q9Y234 373 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 CMAHPQ9Y471 501 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 V9GYH0 126 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 TMEM200CA6NKL6 621 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 PGRMC2O15173 223 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 SEC14L5O43304 696 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 PRKYO43930 277 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 ZNF354AO60765 605 aaPredicted RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 WISP1O95388 367 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 ALPPP05187 535 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 IFNA8P32881 189 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 SOX3P41225 446 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 NCBP2P52298 156 aaKnown RBP eCLIP11.32□□□□□ -0.6
VRK3-202ENST00000377011 WNT4P56705 351 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 PRR5P85299 388 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 MRPL49Q13405 166 aaKnown RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 TPBGQ13641 420 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 GINS1Q14691 196 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 LARS2Q15031 903 aaKnown RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 CEBPEQ15744 281 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 C1QTNF12Q5T7M4 302 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 RSBN1Q5VWQ0 802 aaPredicted RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 ZNF227Q86WZ6 799 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 RBM45Q8IUH3 476 aaKnown RBP11.32□□□□□ -0.6
VRK3-202ENST00000377011 ZADH2Q8N4Q0 377 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 TEX47Q8TBZ9 253 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 M1APQ8TC57 530 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 XAGE5Q8WWM1 108 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 ASB15Q8WXK1 588 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 AP3S1Q92572 193 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 SLC38A2Q96QD8 506 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 TAAR6Q96RI8 345 aa11.32□□□□□ -0.6
VRK3-202ENST00000377011 ARHGDIGQ99819 225 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms