RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 ENDOVQ8N8Q3 282 aaKnown RBP8.09□□□□□ -1.11
SYNE1-206ENST00000367253 OR52E4Q8NGH9 312 aa8.09□□□□□ -1.11
SYNE1-206ENST00000367253 BORCS7Q96B45 105 aa8.09□□□□□ -1.11
SYNE1-206ENST00000367253 C14orf79Q96F83 325 aa8.09□□□□□ -1.11
SYNE1-206ENST00000367253 ELMOD3Q96FG2 381 aa8.09□□□□□ -1.11
SYNE1-206ENST00000367253 P2RY11Q96G91 374 aa8.09□□□□□ -1.11
SYNE1-206ENST00000367253 ATG4BQ9Y4P1 393 aa8.09□□□□□ -1.11
SYNE1-206ENST00000367253 CFAP20Q9Y6A4 193 aaKnown RBP8.09□□□□□ -1.11
SYNE1-206ENST00000367253 MYH13Q9UKX3 1938 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 HTRA2O43464 458 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 TIMM8AO60220 97 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 AHSGP02765 367 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 H1F0P07305 194 aaKnown RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 TIMP2P16035 220 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 CHRNB2P17787 502 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 ENGP17813 658 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 SSTR2P30874 369 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 CCR6P51684 374 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 CDK3Q00526 305 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 HES1Q14469 280 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 RAB41Q5JT25 222 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 LIPJQ5W064 366 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 NANOGP8Q6NSW7 305 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 GSG1LQ6UXU4 331 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 KMT5CQ86Y97 462 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 DDX60Q8IY21 1712 aaKnown RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 NAGSQ8N159 534 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 C1orf74Q96LT6 269 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 WDR83Q9BRX9 315 aaKnown RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 OR11A1Q9GZK7 315 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 C2orf42Q9NWW7 574 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 PCTPQ9UKL6 214 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 FAM90A27PA6NNH2 459 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 A8MXE2 369 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 TMEM189-UBE2V1I3L0A0 370 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 AGPAT2O15120 278 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 SCAMP5Q8TAC9 235 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 LGALS12Q96DT0 336 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 SMIM12Q96EX1 92 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 NUDT11Q96G61 164 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 NKX6-2Q9C056 277 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 RREB1Q92766 1687 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 TRBV11-1A0A0K0K1C0 115 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 TLCD2A6NGC4 264 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 OR4F21O95013 312 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 PRPS1L1P21108 318 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 FGF7P21781 194 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 BMP8BP34820 402 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 SLC7A9P82251 487 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 HTD2P86397 168 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 GTF2H2Q13888 395 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 TSTD2Q5T7W7 516 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 GTF2H2CQ6P1K8 395 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 DLK2Q6UY11 383 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 SPNS3Q6ZMD2 512 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 CAMKMTQ7Z624 323 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 RETREG3Q86VR2 466 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 NEIL3Q8TAT5 605 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 HAS1Q92839 578 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 PARD6GQ9BYG4 376 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 CD244Q9BZW8 370 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 NXF5Q9H1B4 397 aaKnown RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 IQCF5A8MTL0 148 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 C2CD4DB7Z1M9 353 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 HHLA1C9JL84 531 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 H3BML4 177 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 PHYHO14832 338 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 SLC16A5O15375 505 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 TBX18O95935 607 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 GABRA1P14867 456 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 ZNF136P52737 540 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 TAS2R40P59535 323 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 FMO1Q01740 532 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 KLF1Q13351 362 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 SYT13Q7L8C5 426 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 MRPL10Q7Z7H8 261 aaKnown RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 OR13G1Q8NGZ3 307 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 TXNDC15Q96J42 360 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 MYRFLQ96LU7 910 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 RHNO1Q9BSD3 238 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 DUSP26Q9BV47 211 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 RNF215Q9Y6U7 377 aa8.08□□□□□ -1.12
SYNE1-206ENST00000367253 RP1L1Q8IWN7 2480 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-206ENST00000367253 A0A0B4J293 547 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 OR5H15A6NDH6 313 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 OR5H14A6NHG9 310 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 OR5H1A6NKK0 313 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 TLX2O43763 284 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-206ENST00000367253 PPP1R11O60927 126 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-206ENST00000367253 SLC43A1O75387 559 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 SC5DO75845 299 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 AKR1C2P52895 323 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 SCARB2Q14108 478 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 VEZF1Q14119 521 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 RSPO4Q2I0M5 234 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-206ENST00000367253 TMEM69Q5SWH9 247 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 STEAP4Q687X5 459 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 TMPRSS12Q86WS5 348 aa8.07□□□□□ -1.12
SYNE1-206ENST00000367253 RPS19BP1Q86WX3 136 aaKnown RBP8.07□□□□□ -1.12
SYNE1-206ENST00000367253 LAS2Q8IYD9 372 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms