RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 RBMXL3Q8N7X1 1067 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 COQ8AQ8NI60 647 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 LMO3Q8TAP4 145 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 OSTF1Q92882 214 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 RNASE6Q93091 150 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 MS4A4EQ96PG1 132 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 COQ7Q99807 217 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 DESI2Q9BSY9 194 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 CWH43Q9H720 699 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 NRN1Q9NPD7 142 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 FAM120CQ9NX05 1096 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 FLRT1Q9NZU1 646 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 A0A1W2PPM1 405 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 GXYLT2A0PJZ3 443 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 F10P00742 488 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 IFNA5P01569 189 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ORM1P02763 201 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 JUNP05412 331 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 RPS17P08708 135 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 UGT2B7P16662 529 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PRKCAP17252 672 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 RPL14P50914 215 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 SUMO3P55854 103 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 CLDN15P56746 228 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 RIPK1Q13546 671 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 AGERQ15109 404 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 UGT3A2Q3SY77 523 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ZFP69Q49AA0 526 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ARL13AQ5H913 290 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 MZT2BQ6NZ67 158 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 THSD4Q6ZMP0 1018 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 BNIPLQ7Z465 357 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 GATSQ8NAP1 163 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 SIMC1Q8NDZ2 872 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 CCDC107Q8WV48 283 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 DAZAP1Q96EP5 407 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 ZNF419Q96HQ0 510 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 CRISPLD1Q9H336 500 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 DPEP3Q9H4B8 488 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 MAN2C1Q9NTJ4 1040 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 DNAJB9Q9UBS3 223 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 HS3ST2Q9Y278 367 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 OR6C68A6NDL8 312 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 MEIS3P1A6NDR6 274 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 MCRIP1C9JLW8 97 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 H0YGG7 62 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 SLC19A2O60779 497 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 CTSVO60911 334 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PRKRAO75569 313 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 NSA2O95478 260 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 SERPINE2P07093 398 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 UBCP0CG48 685 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 SMIM17P0DL12 118 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 MSR1P21757 451 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 HLA-DMAP28067 261 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 BLVRBP30043 206 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 SOX18P35713 384 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 KIR2DL1P43626 348 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 KIR2DL2P43627 348 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 CASP7P55210 303 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 DCDC1P59894 354 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 MRPS35P82673 323 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 TNFAIP6P98066 277 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 LTBQ06643 244 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 LASP1Q14847 261 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 SHBQ15464 509 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 UGCGQ16739 394 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ZNF57Q68EA5 555 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 ZNF773Q6PK81 442 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ESPNLQ6ZVH7 1005 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 BHLHA15Q7RTS1 189 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 SCD5Q86SK9 330 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 OR52M1Q8NGK5 317 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PIWIL2Q8TC59 973 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 FBXO25Q8TCJ0 367 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 MARCH1Q8TCQ1 289 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 DNAJC9Q8WXX5 260 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 MCHR1Q99705 422 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 MTHFD2LQ9H903 347 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 SAP30LQ9HAJ7 183 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 GP6Q9HCN6 339 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 CBLCQ9ULV8 474 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ODAMA1E959 279 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 EME2A4GXA9 379 aaPredicted RBP3.78□□□□□ -1.8
USH2A-202ENST00000366942 IFI30P13284 250 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 TEAD1P28347 426 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 TRHRP34981 398 aaPredicted RBP3.78□□□□□ -1.8
USH2A-202ENST00000366942 APOBEC1P41238 236 aaKnown RBP3.78□□□□□ -1.8
USH2A-202ENST00000366942 ZNF83P51522 516 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 JAM2P57087 298 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 ERVFRD-1P60508 538 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 ACTC1P68032 377 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 ACTA1P68133 377 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 PRKCDQ05655 676 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 OR7A5Q15622 319 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 GRK1Q15835 563 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 ZNF750Q32MQ0 723 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 ACSBG2Q5FVE4 666 aa3.78□□□□□ -1.8
USH2A-202ENST00000366942 ZNF362Q5T0B9 420 aaPredicted RBP3.78□□□□□ -1.8
USH2A-202ENST00000366942 TPRG1LQ5T0D9 272 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms