RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 FOXL2P58012 376 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 CLRN1P58418 232 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ESRRGP62508 458 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 IFITM2Q01629 132 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 GRM7Q14831 915 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ELAVL1Q15717 326 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 CD226Q15762 336 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ZNF239Q16600 458 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 HIST2H2ACQ16777 129 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 SYT16Q17RD7 645 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ZMAT1Q5H9K5 638 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 GCNT6Q5T4J0 391 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 GARNL3Q5VVW2 1013 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PLAG1Q6DJT9 500 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 TMEM108Q6UXF1 575 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 MTSS1LQ765P7 747 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 IFNEQ86WN2 208 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 D2HGDHQ8N465 521 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ZNF808Q8N4W9 903 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 C11orf44Q8N8P7 122 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 TTC29Q8NA56 475 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 CADM4Q8NFZ8 388 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 GEMIN6Q8WXD5 167 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 HGDQ93099 445 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 WDYHV1Q96HA8 205 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 VPS50Q96JG6 964 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 EGFL8Q99944 293 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 SLX1AQ9BQ83 275 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 CCDC68Q9H2F9 335 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ADGRL4Q9HBW9 690 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ISYNA1Q9NPH2 558 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 B3GAT2Q9NPZ5 323 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 POT1Q9NUX5 634 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 FAIMQ9NVQ4 179 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PLA2G3Q9NZ20 509 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PDP1Q9P0J1 537 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 DKK4Q9UBT3 224 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 DIMT1Q9UNQ2 313 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 AURKCQ9UQB9 309 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ERGIC3Q9Y282 383 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 YARS2Q9Y2Z4 477 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 UGT2A1Q9Y4X1 527 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 A3GALT2U3KPV4 340 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 CABIN1Q9Y6J0 2220 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 SPTA1P02549 2419 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 MED12LQ86YW9 2145 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 A0A087WXM4 84 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 IGLV3-32A0A0A0MS00 114 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 A0A0G2JN53 185 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 A0A0G2JPF8 293 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 A0A1B0GTQ1 180 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 A0A1W2PPC1 479 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 TCRBV21S2A2A0A5A6 115 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ZNF99A8MXY4 864 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 HNRNPCL2B2RXH8 293 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 HNRNPCL3B7ZW38 293 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 E9PI62 339 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 WWP2O00308 870 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 DCTN6O00399 190 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 SCAMP1O15126 338 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PIN1P1O15428 100 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 EPN2O95208 641 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 OXSR1O95747 527 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 TXNDC12O95881 172 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ADAP00813 363 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 IGHMP01871 453 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 STSP08842 583 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 HNRNPCL4P0DMR1 293 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ALPPL2P10696 532 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 CYP4B1P13584 511 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 FPR3P25089 353 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 FGF9P31371 208 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 RPS19P39019 145 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 CCT3P49368 545 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 RGS6P49758 472 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 RPS15AP62244 130 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 BTG2P78543 158 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 IL1RL1Q01638 556 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ZNF91Q05481 1191 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ACSM2AQ08AH3 577 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 FOXO1Q12778 655 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 EPS8Q12929 822 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 TPBGQ13641 420 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 HIST3H3Q16695 136 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 IMPG1Q17R60 797 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 OTUD3Q5T2D3 398 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 ACSM2BQ68CK6 577 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ABLIM2Q6H8Q1 611 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 QSOX2Q6ZRP7 698 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 RASSF6Q6ZTQ3 369 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PRSS42Q7Z5A4 293 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 NUDT13Q86X67 352 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PHC2Q8IXK0 858 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ESX1Q8N693 406 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 C11orf65Q8NCR3 313 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 FAM83FQ8NEG4 500 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 TNIP2Q8NFZ5 429 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 TRUB1Q8WWH5 349 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 POP5Q969H6 163 aaKnown RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 TRIM63Q969Q1 353 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms