RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 HSD17B12Q53GQ0 312 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 COX20Q5RI15 118 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 GALNTL5Q7Z4T8 443 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 POGLUT1Q8NBL1 392 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 ZNF675Q8TD23 568 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 BRIX1Q8TDN6 353 aaKnown RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 F5H5K5 113 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 CCL4P13236 92 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 HOXB9P17482 250 aaPredicted RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 RPS23P62266 143 aaKnown RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 MYBPHQ13203 477 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 C9orf135Q5VTT2 229 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 H1FNTQ75WM6 255 aaPredicted RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 PDSS2Q86YH6 399 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 LILRA2Q8N149 483 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 ZNF611Q8N823 705 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 WDR54Q9H977 334 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 SH2B3Q9UQQ2 575 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 TRBV2A0A0J9YWF9 115 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 H0YJX3 145 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 H3BSH0 61 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 SLC16A7O60669 478 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 RGS9O75916 674 aaPredicted RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 LIPCP11150 499 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 MMP11P24347 488 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 GLP1RP43220 463 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 MTFR2Q6P444 385 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 IGFN1Q86VF2 1251 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 NEDD4LQ96PU5 975 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 SDF2Q99470 211 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 NUDT9Q9BW91 350 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 ELOVL3Q9HB03 270 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 PRDM7Q9NQW5 492 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 RYDENQ9NUL5 291 aaKnown RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 PAK1IP1Q9NWT1 392 aaPredicted RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 MYO18AQ92614 2054 aaKnown RBP9.35□□□□□ -0.91
USP54-201ENST00000339859 ANKUB1A6NFN9 424 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 NUDT7P0C024 238 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 UQCRC1P31930 480 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 SLC1A3P43003 542 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 MTNR1AP48039 350 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 DUSP8Q13202 625 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 SELPLGQ14242 412 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 NKG7Q16617 165 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 FAM69AQ5T7M9 428 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 ZNF687Q8N1G0 1237 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 FAM181AQ8N9Y4 354 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 OR5M1Q8NGP8 315 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 OR5AK2Q8NH90 309 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 PPP1R35Q8TAP8 253 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 RAB2BQ8WUD1 216 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 RAB33BQ9H082 229 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 QRSL1Q9H0R6 528 aaKnown RBP9.35□□□□□ -0.91
USP54-201ENST00000339859 SPNS1Q9H2V7 528 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 FAM118AQ9NWS6 357 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 SERTM1A2A2V5 107 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 RAD51DO75771 328 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 INMTO95050 263 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 ZNF35P13682 527 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 UBASH3BQ8TF42 649 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 TMEM41AQ96HV5 264 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 GAL3ST1Q99999 423 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 URM1Q9BTM9 101 aaKnown RBP9.35□□□□□ -0.91
USP54-201ENST00000339859 C20orf27Q9GZN8 174 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 CNOT11Q9UKZ1 510 aaKnown RBP9.35□□□□□ -0.91
USP54-201ENST00000339859 ASB1Q9Y576 335 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 TRGV5A0A0B4J1U4 118 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 SLC22A20A6NK97 555 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 SSNA1O43805 119 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 KIR2DL3P43628 341 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 BIDP55957 195 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 GNG2P59768 71 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 TSPAN31Q12999 210 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 RSU1Q15404 277 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 IQCF1Q8N6M8 205 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 LHX6Q9UPM6 363 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 MOKQ9UQ07 419 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 IGLV3-19P01714 112 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 ANKRD34CP0C6C1 535 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 CNR1P21554 472 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 HTR5AP47898 357 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 MAD2L1BPQ15013 274 aaPredicted RBP9.35□□□□□ -0.91
USP54-201ENST00000339859 ACER2Q5QJU3 275 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 OGFOD3Q6PK18 319 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 LRRC18Q8N456 261 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 PSMA8Q8TAA3 256 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 ABCB9Q9NP78 766 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 LCTP09848 1927 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 ZNF195O14628 629 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 LPLP06858 475 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 NAGAP17050 411 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 ST3GAL4Q11206 333 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 PGGHGQ32M88 737 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 ZNF565Q8N9K5 539 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 BOD1Q96IK1 185 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 PRMT8Q9NR22 394 aaPredicted RBP9.35□□□□□ -0.91
USP54-201ENST00000339859 PLA2G3Q9NZ20 509 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 IL20RAQ9UHF4 553 aa9.35□□□□□ -0.91
USP54-201ENST00000339859 SLC22A1O15245 554 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 RLN1P04808 185 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms