RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 FAHD2AQ96GK7 314 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 SECISBP2Q96T21 854 aaKnown RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 ZBTB18Q99592 522 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 CCT7Q99832 543 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 CITED1Q99966 193 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 CRNKL1Q9BZJ0 848 aaKnown RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 VPS37BQ9H9H4 285 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 NMRK1Q9NWW6 199 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 OR1A1Q9P1Q5 309 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF256Q9Y2P7 627 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 USP16Q9Y5T5 823 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 SSH2Q76I76 1423 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 RIMS2Q9UQ26 1411 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 CASP8AP2Q9UKL3 1982 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 PLEKHH2Q8IVE3 1493 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 CACNA1GO43497 2377 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 NSD2O96028 1365 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 MTUS2Q5JR59 1369 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 SMIM28A0A1B0GU29 152 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 A0A1W2PNV4 684 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 A8MUI8 341 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 PPIAL4DF5H284 164 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 SGK1O00141 431 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 EFNA2O43921 213 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 KLHL41O60662 606 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF254O75437 659 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 B3GAT3O94766 335 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 UFL1O94874 794 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 ADCY5O95622 1261 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 SEMG1P04279 462 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 TOP1P11387 765 aaKnown RBP2.39□□□□□ -2.03
HMGB1-201ENST00000326004 PGCP20142 388 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 CA8P35219 290 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 KIR2DS2P43631 304 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 BDKRB1P46663 353 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 STARP49675 285 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 RGS4P49798 205 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 DIO3P55073 304 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 LIM2P55344 173 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 CCNA1P78396 465 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 TNFRSF17Q02223 184 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 ST3GAL3Q11203 375 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 MRPL28Q13084 256 aaKnown RBP2.39□□□□□ -2.03
HMGB1-201ENST00000326004 CUL2Q13617 745 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 DDX39BQ13838 428 aaKnown RBP2.39□□□□□ -2.03
HMGB1-201ENST00000326004 LAGE3Q14657 143 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 ZMYND11Q15326 602 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 TPD52L1Q16890 204 aaPredicted RBP2.39□□□□□ -2.03
HMGB1-201ENST00000326004 TATDN3Q17R31 274 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 CCDC57Q2TAC2 916 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 KCTD21Q4G0X4 260 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 TMEM52BQ4KMG9 183 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 RABGAP1LQ5R372 815 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 ACSM5Q6NUN0 579 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 PMF1Q6P1K2 205 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 CXCL17Q6UXB2 119 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 DNM1P46Q6ZS02 220 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 TRPM8Q7Z2W7 1104 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 PPP1R27Q86WC6 154 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 OR52K2Q8NGK3 314 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 OR2A12Q8NGT7 310 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 HAVCR1Q96D42 359 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 PHYHIPLQ96FC7 376 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 TCEANC2Q96MN5 208 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 SMIM14Q96QK8 99 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 CNPY3Q9BT09 278 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 NMUR2Q9GZQ4 415 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 RHOJQ9H4E5 214 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 AIPL1Q9NZN9 384 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 ADAM22Q9P0K1 906 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 WRAP73Q9P2S5 460 aaPredicted RBP2.39□□□□□ -2.03
HMGB1-201ENST00000326004 RIMS3Q9UJD0 308 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 PTBP2Q9UKA9 531 aaKnown RBP2.39□□□□□ -2.03
HMGB1-201ENST00000326004 GSTK1Q9Y2Q3 226 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 WDR45Q9Y484 360 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 OARD1Q9Y530 152 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 CCDC144AA2RUR9 1427 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 TNS3Q68CZ2 1445 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 ADAMTS13Q76LX8 1427 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 SYNRGQ9UMZ2 1314 aa2.39□□□□□ -2.03
HMGB1-201ENST00000326004 COL14A1Q05707 1796 aaKnown RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 RLFQ13129 1914 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 A0A0C4DFX4 3053 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 ARHGEF10O15013 1369 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 IGHV7-81A0A0B4J1V7 117 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 LOC100131303A0A0U1RQF7 123 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 XKRY2A2RUG3 117 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 CTAGE15A4D2H0 777 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 PP2D1A8MPX8 630 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 UGT2B17O75795 530 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 TM7SF2O76062 418 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 IL1BP01584 269 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 IGLL1P15814 213 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 TPSB2P20231 275 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 VDAC1P21796 283 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 CALB2P22676 271 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 NTSP30990 170 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 GCKP35557 465 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms