RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 CPEP16870 476 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ACRV1P26436 265 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 HTR2CP28335 458 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 GIPRP48546 466 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 MFGE8Q08431 387 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 VWA2Q5GFL6 755 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ZMAT1Q5H9K5 638 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 AADACL2Q6P093 401 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 CEACAM20Q6UY09 585 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 DPY19L2P2Q6ZN68 376 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 GALNT5Q7Z7M9 940 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 UEVLDQ8IX04 471 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 CADM3Q8N126 398 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM104Q8NE00 496 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 NAA11Q9BSU3 229 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 PPIL3Q9H2H8 161 aaKnown RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 MYEF2Q9P2K5 600 aaKnown RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 NCDNQ9UBB6 729 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 SCN5AQ14524 2016 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF850A8MQ14 1090 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 F6UZH7 168 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 OIP5O43482 229 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 MED6O75586 246 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 SCGB1C2P0DMR2 95 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 AMY2BP19961 511 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 BDNFP23560 247 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 AFF3P51826 1226 aaKnown RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 RGNQ15493 299 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 HAGHQ16775 308 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 PNLIPRP3Q17RR3 467 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 TIGD5Q53EQ6 642 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 C1orf220Q5T0J3 134 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 SLC18B1Q6NT16 456 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 KLHDC1Q8N7A1 406 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 OR8G5Q8NG78 346 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF681Q96N22 645 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF426Q9BUY5 554 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 PCED1AQ9H1Q7 454 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 DDX4Q9NQI0 724 aaKnown RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 PHLPP1O60346 1717 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 CACNA1SQ13698 1873 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF736B4DX44 427 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 MT-ND4LP03901 98 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 HNRNPA1P09651 372 aaKnown RBP eCLIP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 EVI2BP34910 448 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 VASPP50552 380 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 HBG1P69891 147 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 HBG2P69892 147 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 OPCMLQ14982 345 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ACOT6Q3I5F7 207 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 SIRPB2Q5JXA9 342 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ETFRF1Q6IPR1 90 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 RABEPKQ7Z6M1 372 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 LRRTM4Q86VH4 590 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 MSLNLQ96KJ4 702 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 TAS2R5Q9NYW4 299 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 CHRNA9Q9UGM1 479 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 TLX2O43763 284 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 PRR35P0CG20 571 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 SYN1P17600 705 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 G0S2P27469 103 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 OPRD1P41143 372 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF140P52738 457 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF674Q2M3X9 581 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 GTDC1Q4AE62 458 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 TSSK4Q6SA08 328 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 MCATQ8IVS2 390 aaKnown RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 PXT1Q8NFP0 134 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 CMTM2Q8TAZ6 248 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 FBLIM1Q8WUP2 373 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 LRR1Q96L50 414 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 SERINC2Q96SA4 455 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 CMSS1Q9BQ75 279 aaKnown RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 COL6A6A6NMZ7 2263 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 F5P12259 2224 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 F8W036 122 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 TP53I11O14683 189 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 ADH1BP00325 375 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 IGF2P01344 180 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 HLA-HP01893 362 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 GP1BBP13224 206 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 TACR3P29371 465 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 PRDX3P30048 256 aaKnown RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 FCER1GP30273 86 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 GCGRP47871 477 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 UFM1P61960 85 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 LGALSLQ3ZCW2 172 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-201ENST00000303395 SLC39A4Q6P5W5 647 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 GDPD4Q6W3E5 623 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 CDHR3Q6ZTQ4 885 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 B3GNT8Q7Z7M8 397 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 PROKR1Q8TCW9 393 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 DIO2Q92813 273 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 NIPSNAP3BQ9BS92 247 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 LINC00597Q9H2U6 94 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 UBQLN3Q9H347 655 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 SERTAD3Q9UJW9 196 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 RNF11Q9Y3C5 154 aa4.92□□□□□ -1.62
SCN1A-201ENST00000303395 PPP5D1E7EU14 171 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 TBL1XO60907 577 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms