RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PCDHGB4Q9UN71 923 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 FCMRO60667 390 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 PGRP06401 933 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 MPGP29372 298 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 PGM1P36871 562 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 SERPINB5P36952 375 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 OR2B6P58173 313 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 H3F3AP84243 136 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 SWI5Q1ZZU3 235 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 C6orf136Q5SQH8 315 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 IL23RQ5VWK5 629 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 RIMKLAQ8IXN7 391 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 ARFGAP2Q8N6H7 521 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 ARIH2OSQ8N7S6 290 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 DDIT4LQ96D03 193 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 FBXO17Q96EF6 278 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 ARL5BQ96KC2 179 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 KCNS3Q9BQ31 491 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 C1orf50Q9BV19 199 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 MOV10Q9HCE1 1003 aaKnown RBP12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 WDR45Q9Y484 360 aa12.93□□□□□ -0.34
CCDC88B-201ENST00000301897 RNF103-CHMP3A0A140T963 221 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 TMEM233B4DJY2 109 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 SHBGP04278 402 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 CHRNGP07510 517 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 NTF4P34130 210 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 RPS26P62854 115 aaKnown RBP12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 IQCCQ4KMZ1 466 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 ADGRG3Q86Y34 549 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 CCDC103Q8IW40 242 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 RFLNBQ8N5W9 214 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 KRTCAP2Q8N6L1 136 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 POMGNT2Q8NAT1 580 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 OR52E4Q8NGH9 312 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 BOD1Q96IK1 185 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 PRR14Q9BWN1 585 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 PIF1Q9H611 641 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 SLC7A10Q9NS82 523 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 MKS1Q9NXB0 559 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 PRDM4Q9UKN5 801 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 FLVCR1Q9Y5Y0 555 aa12.92□□□□□ -0.34
CCDC88B-201ENST00000301897 SLC35F4A4IF30 521 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 ATP6V1G2-DDX39BF2Z307 99 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 RNASET2O00584 256 aaKnown RBP12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 ZNF208O43345 1280 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 PDE5AO76074 875 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 LY6HO94772 140 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 SLU7O95391 586 aaKnown RBP12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 ZNF23P17027 643 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 RYKP34925 604 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 POLR2HP52434 150 aaKnown RBP12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 HPCAP84074 193 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 SLC17A1Q14916 467 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 MAPK14Q16539 360 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 SMU1Q2TAY7 513 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 MST1LQ2TV78 715 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 PGS1Q32NB8 556 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 C9orf135Q5VTT2 229 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 EMBQ6PCB8 327 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 PAQR6Q6TCH4 344 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 SLC46A3Q7Z3Q1 461 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 CMIPQ8IY22 773 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 C4orf33Q8N1A6 199 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 XAGE5Q8WWM1 108 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 TMEM45BQ96B21 275 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 SORCS2Q96PQ0 1159 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 OR11A1Q9GZK7 315 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 SAP130Q9H0E3 1048 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 OR51I1Q9H343 314 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 SERHL2Q9H4I8 314 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 GIMAP2Q9UG22 337 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 MOKQ9UQ07 419 aa12.91□□□□□ -0.34
CCDC88B-201ENST00000301897 CENPVL1A0A0U1RR11 272 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 B9A039 149 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 TGFAP01135 160 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 ERCC1P07992 297 aaPredicted RBP12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 UQCRBP14927 111 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 ALDH3A1P30838 453 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 SERPINF1P36955 418 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 FOXG1P55316 489 aaPredicted RBP12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 CLDN8P56748 225 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 KCNJ10P78508 379 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 SLC25A3Q00325 362 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 CARTPTQ16568 116 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 TSPO2Q5TGU0 170 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 UGT2A3Q6UWM9 527 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 EIF1ADQ8N9N8 165 aaKnown RBP12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 VPS37AQ8NEZ2 397 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 OR8J2Q8NGG1 315 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 TUBGCP3Q96CW5 907 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 FOXN4Q96NZ1 517 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 ZIM3Q96PE6 472 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 ZNF317Q96PQ6 595 aaPredicted RBP12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 SLC38A2Q96QD8 506 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 VRK1Q99986 396 aaPredicted RBP12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 RHOXF2Q9BQY4 288 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 KATNB1Q9BVA0 655 aa12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 SF3B5Q9BWJ5 86 aaKnown RBP12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 ASIC5Q9NY37 505 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms