RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CELP19835 753 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 HNRNPA2B1P22626 353 aaKnown RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 FPR3P25089 353 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 AOAHP28039 575 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 IRS1P35568 1242 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 PCP4P48539 62 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 OLIG2Q13516 323 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 LDLRAD1Q5T700 205 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 TMEM268Q5VZI3 342 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 TEX261Q6UWH6 196 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ZNF695Q8IW36 515 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 TP53INP2Q8IXH6 220 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SYNPO2LQ9H987 977 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 HEMK1Q9Y5R4 338 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 U3KQ87 197 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 TRAV34A0A0B4J273 112 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 CDHR4A6H8M9 788 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 OR51F1A6NGY5 319 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 RAD1O60671 282 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ALPIP09923 528 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SCGB1A1P11684 91 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 CTRB1P17538 263 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 PAX6P26367 422 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SSTR4P31391 388 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 OR2B8PP59922 312 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 KRTDAPP60985 99 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ZNF718Q3SXZ3 478 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 Q3ZCU0 254 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 CATSPEREQ5SY80 951 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 CTRB2Q6GPI1 263 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 UQCC3Q6UW78 93 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 MEX3BQ6ZN04 569 aaKnown RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 THOC6Q86W42 341 aaKnown RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 C17orf64Q86WR6 236 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ELP5Q8TE02 316 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 INTS12Q96CB8 462 aaKnown RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 SLC35G5Q96KT7 338 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ORAI3Q9BRQ5 295 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 RANGRFQ9HD47 186 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 EXO1Q9UQ84 846 aaKnown RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 LRIT2A6NDA9 550 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 H3BVH4 76 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 GSTZ1O43708 216 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 SIX6O95475 246 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 MAS1P04201 325 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ATP1B2P14415 290 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 CD1EP15812 388 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ZP3P21754 424 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 C21orf33P30042 268 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 CNR2P34972 360 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 AGTR2P50052 363 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 EPHB3P54753 998 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 PCBP3P57721 371 aaKnown RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 PRAMEF19Q5SWL8 479 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 NXNL2Q5VZ03 156 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SLC6A19Q695T7 634 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 LCTLQ6UWM7 567 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 PDZD3Q86UT5 571 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 TMEM200AQ86VY9 491 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SIGLECL1Q8N7X8 197 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 INTS14Q96SY0 518 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 MED16Q9Y2X0 877 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 A0A1B0GUH1 482 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 LRRC72A6NJI9 287 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SAP18O00422 153 aaKnown RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 TSPAN6O43657 245 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 GPX5O75715 221 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ITGB2P05107 769 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ACVR1BP36896 505 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 THPOP40225 353 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 CDKN1CP49918 316 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 HK3P52790 923 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ECH1Q13011 328 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 PDZK1IP1Q13113 114 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 RAB31Q13636 194 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SLC17A1Q14916 467 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ADIRFQ15847 76 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 LDB1Q86U70 411 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 GPAT4Q86UL3 456 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 PRR18Q8N4B5 295 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SYT14Q8NB59 555 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 FAM3CQ92520 227 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 EXTL1Q92935 676 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 PYCR2Q96C36 320 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 PGLYRP2Q96PD5 576 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 CRLF2Q9HC73 371 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SLAMF8Q9P0V8 285 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SCML1Q9UN30 329 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 RNF24Q9Y225 148 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 LOC105369274A0A096LPK9 316 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 OR13C7P0DN81 318 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 HOXB9P17482 250 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 NME2P22392 152 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 CCR7P32248 378 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SEMG2Q02383 582 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 HEPHL1Q6MZM0 1159 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 MRGPREQ86SM8 312 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 OR4N4Q8N0Y3 316 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 COX18Q8N8Q8 333 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 BTF3L4Q96K17 158 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms