RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ZNF74Q16587 644 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 OR6T1Q8NGN1 323 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 MRPL38Q96DV4 380 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 LRFN5Q96NI6 719 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 PELOQ9BRX2 385 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 RPH3ALQ9UNE2 315 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 CEBPZOSA8MTT3 80 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 K7ERQ8 282 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SURF4O15260 269 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 RPS5P46782 204 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 TLE4Q04727 773 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 EMX1Q04741 257 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 MELKQ14680 651 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SPCS2Q15005 226 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 HYAL4Q2M3T9 481 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 LINC01465Q8N7H1 131 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF417Q8TAU3 575 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 GPR148Q8TDV2 347 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 RAB7BQ96AH8 199 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 THSD1Q9NS62 852 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 EHFQ9NZC4 300 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 PLXNB2O15031 1838 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 FEZF1A0PJY2 475 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 RNH1P13489 461 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 GLO1Q04760 184 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 MSMO1Q15800 293 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 DEFB134Q4QY38 66 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 TTC9BQ8N6N2 239 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 OR4K5Q8NGD3 323 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 OLIG1Q8TAK6 271 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SCAMP4Q969E2 229 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 ZMYND19Q96E35 227 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 PDCD1LG2Q9BQ51 273 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 MVB12BQ9H7P6 319 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 ENPP4Q9Y6X5 453 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 BMP4P12644 408 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 FBLP22087 321 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 PRPH2P23942 346 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 GLB1L2Q8IW92 636 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 CLECL1Q8IZS7 167 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 FAM122AQ96E09 287 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 PCNX2A6NKB5 2137 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 CLDN24A6NM45 220 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 TK1P04183 234 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 PRPS1P60891 318 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SSX7Q7RTT5 188 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 APIPQ96GX9 242 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 MS4A4EQ96PG1 132 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 USB1Q9BQ65 265 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 PATZ1Q9HBE1 687 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 EMC7Q9NPA0 242 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 ACAD8Q9UKU7 415 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 EP300Q09472 2414 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 AK1P00568 194 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 CSNK1DP48730 415 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SELENOWP63302 87 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SPOCK1Q08629 439 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 CAMK2DQ13557 499 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 ELAVL3Q14576 367 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 TP53I3Q53FA7 332 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 FAM58AQ8N1B3 248 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 ISG20Q96AZ6 181 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 A0A087WZY1 265 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SLC2A1P11166 492 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 GTDC1Q4AE62 458 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 LY6G5CQ5SRR4 150 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 CCNJQ5T5M9 372 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 FIGNL1Q6PIW4 674 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SH2D5Q6ZV89 423 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 PAQR9Q6ZVX9 377 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 RAB39BQ96DA2 213 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 ARPC5LQ9BPX5 153 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 CERS4Q9HA82 394 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 CNOT2Q9NZN8 540 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 WNT6Q9Y6F9 365 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SPTAN1Q13813 2472 aaKnown RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 J3QR89 54 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 MSTNO14793 375 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 NCR1O76036 304 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 TFAP2AP05549 437 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 RPS18P62269 152 aaKnown RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SORDQ00796 357 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ATPAF1Q5TC12 328 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SLX4IPQ5VYV7 408 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 APCDD1Q8J025 514 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 CSNK1A1LQ8N752 337 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ST8SIA2Q92186 375 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 OR10A5Q9H207 317 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 OR10A2Q9H208 303 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SPHK2Q9NRA0 654 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 MRPS10P82664 201 aaKnown RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ZMAT1Q5H9K5 638 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 MCATQ8IVS2 390 aaKnown RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ABCA7Q8IZY2 2146 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 INSL6Q9Y581 213 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 NPIPB15A6NHN6 443 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ZIC2O95409 532 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 TAGLN2P37802 199 aaKnown RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 CATSPEREQ5SY80 951 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 GPR78Q96P69 363 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms