RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ACOXLQ9NUZ1 547 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 BOKQ9UMX3 212 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 ERCC6L2Q5T890 1561 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 KDM4FA0A1W2PPD8 638 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 SMLR1H3BR10 107 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 CAPNS1P04632 268 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 COTL1Q14019 142 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 GRM2Q14416 872 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 PAFAH1B3Q15102 231 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 FAM182AQ5T1J6 154 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 ILDR1Q86SU0 546 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 CMASQ8NFW8 434 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 OR10K1Q8NGX5 313 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 KCTD12Q96CX2 325 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 EXOSC3Q9NQT5 275 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 RIPK3Q9Y572 518 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF732B4DXR9 585 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 SPINT2O43291 252 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 ABOP16442 354 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 CLDN8P56748 225 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 CHADLQ6NUI6 762 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF765Q7L2R6 523 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 OR2M3Q8NG83 312 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 KCNK12Q9HB15 430 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 HS3ST4Q9Y661 456 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 OR6C68A6NDL8 312 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 TUBAL3A6NHL2 446 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 H3BML4 177 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 HNRNPA2B1P22626 353 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 DEFB119Q8N690 84 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 DIP2AQ14689 1571 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 CHD2O14647 1828 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 S100A8P05109 93 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 RPL17P18621 184 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 GGT5P36269 586 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 ENDOGQ14249 297 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 C6orf89Q6UWU4 347 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 HUS1BQ8NHY5 278 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 IGHEP01854 428 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 TRAPPC2P0DI81 140 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 TRAPPC2BP0DI82 140 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 KHDC1LQ5JSQ8 128 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 BOD1Q96IK1 185 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 SLCO5A1Q9H2Y9 848 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 PRSS44E7EML9 344 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 CPOXP36551 454 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 RNF144AP50876 292 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 RABEPKQ7Z6M1 372 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 CLDN19Q8N6F1 224 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 RNF150Q9ULK6 438 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 MED16Q9Y2X0 877 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 KLK4Q9Y5K2 254 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF623O75123 536 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 BEX5Q5H9J7 111 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 FAM122BQ7Z309 247 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC35E1Q96K37 410 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 C4orf36Q96KX1 117 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 SEMA4GQ9NTN9 838 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 A0A0B4J2A0 478 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ADAM23O75077 832 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ACP2P11117 423 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 OR7A5Q15622 319 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC35F3Q8IY50 421 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 FRMD1Q8N878 549 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF454Q8N9F8 522 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 SHPKQ9UHJ6 478 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 PTPRUQ92729 1446 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 B3GALNT1O75752 331 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 PCGF2P35227 344 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC1A3P43003 542 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 GABREP78334 506 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 RELL2Q8NC24 303 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 RIMS4Q9H426 269 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ZFP92A6NM28 416 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 LAMTOR5O43504 91 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 XCR1P46094 333 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 MEF2AQ02078 507 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC9A3R2Q15599 337 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF321PQ8N8H1 164 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 RAB3CQ96E17 227 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 DPH7Q9BTV6 452 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ERVMER34-1Q9H9K5 563 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 APOBEC3BQ9UH17 382 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ENPP4Q9Y6X5 453 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ARHGAP23Q9P227 1491 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ORM1P02763 201 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 UNGP13051 313 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 AGTR2P50052 363 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 LSAMPQ13449 338 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 SIMC1Q8NDZ2 872 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 FBXL18Q96ME1 805 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF281Q9Y2X9 895 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 SELPLGQ14242 412 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 ABHD6Q9BV23 337 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 TXNDC12O95881 172 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 IKZF1Q13422 519 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 BLOC1S3Q6QNY0 202 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 SECTM1Q8WVN6 248 aa13.07□□□□□ -0.32
CCDC88A-201ENST00000263630 BORCS6Q96GS4 357 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms