RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 AVPR2P30518 371 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 EVI2BP34910 448 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 GDI2P50395 445 aaKnown RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 CARD18P57730 90 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 ZNF181Q2M3W8 571 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 RIMKLAQ8IXN7 391 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 PRR22Q8IZ63 422 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 MACROD1Q9BQ69 325 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 SLC30A2Q9BRI3 323 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 C7orf50Q9BRJ6 194 aaKnown RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 ALG8Q9BVK2 526 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 TMED9Q9BVK6 235 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 DPAGT1Q9H3H5 408 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 OPA3Q9H6K4 179 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 FBXO8Q9NRD0 319 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 CAMK2AQ9UQM7 478 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 ZNF254O75437 659 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 TRIP6Q15654 476 aaKnown RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 CHDHQ8NE62 594 aaPredicted RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 CCL4L1Q8NHW4 92 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 NEIL3Q8TAT5 605 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 TRAV17A0A0B4J275 112 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 H3BML4 177 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 ANXA3P12429 323 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 GIPRP48546 466 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 LSM14AQ8ND56 463 aaKnown RBP12.6□□□□□ -0.39
LDLR-201ENST00000252444 MUCL1Q96DR8 90 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 FAM173AQ9BQD7 235 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 GABARAPL3Q9BY60 117 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 ZNF350Q9GZX5 532 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 ZNF638Q14966 1978 aaKnown RBP12.6□□□□□ -0.39
LDLR-201ENST00000252444 ANKRD30BLA7E2S9 258 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 TNFRSF21O75509 655 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 CDRT1O95170 752 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 TP53P04637 393 aaPredicted RBP12.6□□□□□ -0.39
LDLR-201ENST00000252444 SLC2A2P11168 524 aaPredicted RBP12.6□□□□□ -0.39
LDLR-201ENST00000252444 NPR2P20594 1047 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 HTR1FP30939 366 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 DSCR4P56555 118 aaPredicted RBP12.6□□□□□ -0.39
LDLR-201ENST00000252444 RUNX2Q13950 521 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 DUSP5Q16690 384 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 ABCA11PQ4W5N1 156 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 HBMQ6B0K9 141 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 AAED1Q7RTV5 226 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 CALHM3Q86XJ0 350 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 PNPLA1Q8N8W4 532 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 UBASH3BQ8TF42 649 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 SPRYD4Q8WW59 207 aaPredicted RBP12.6□□□□□ -0.39
LDLR-201ENST00000252444 NEDD4LQ96PU5 975 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 TMEM43Q9BTV4 400 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 ELOVL3Q9HB03 270 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 SRA1Q9HD15 236 aaKnown RBP12.6□□□□□ -0.39
LDLR-201ENST00000252444 CHST11Q9NPF2 352 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 CHRNA9Q9UGM1 479 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 LOC105369274A0A096LPK9 316 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 LOC102723532A0A0G2JNH3 316 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 TMEM212A6NML5 194 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 ZNF587BE7ETH6 402 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 SERPINA7P05543 415 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 TSPAN5P62079 268 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 ZXDBP98169 803 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 PRKCDQ05655 676 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 MAMSTRQ6ZN01 415 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 OR4N4Q8N0Y3 316 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 CREB3L1Q96BA8 519 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 C16orf58Q96GQ5 468 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 ARHGDIGQ99819 225 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 C14orf166Q9Y224 244 aaKnown RBP12.6□□□□□ -0.39
LDLR-201ENST00000252444 SHROOM3Q8TF72 1996 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 SELPLGQ14242 412 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 CWF19L1Q69YN2 538 aaKnown RBP12.6□□□□□ -0.39
LDLR-201ENST00000252444 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.6□□□□□ -0.39
LDLR-201ENST00000252444 CPOQ8IVL8 374 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 TOMM5Q8N4H5 51 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 SLC35A4Q96G79 324 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 ZNF160Q9HCG1 818 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 B3GALT5Q9Y2C3 310 aa12.6□□□□□ -0.39
LDLR-201ENST00000252444 STK17BO94768 372 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 ACTBP60709 375 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 ACTG1P63261 375 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 RNF4P78317 190 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 SLC23A3Q6PIS1 610 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 SPACA9Q96E40 222 aaPredicted RBP12.59□□□□□ -0.39
LDLR-201ENST00000252444 WACQ9BTA9 647 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 SIDT1Q9NXL6 827 aaKnown RBP12.59□□□□□ -0.39
LDLR-201ENST00000252444 NAP1L6A6NFF2 107 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 EPOPA6NHQ4 379 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 TFPTP0C1Z6 253 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 GKN3PP0CG01 181 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 ELK4P28324 431 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 ADPRMQ3LIE5 342 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 VASH1Q7L8A9 365 aaPredicted RBP12.59□□□□□ -0.39
LDLR-201ENST00000252444 ANKRD53Q8N9V6 530 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 OR52N1Q8NH53 320 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 BRIX1Q8TDN6 353 aaKnown RBP12.59□□□□□ -0.39
LDLR-201ENST00000252444 NINJ1Q92982 152 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 EID2BQ96D98 161 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 POTEKPQ9BYX7 375 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 MAN2C1Q9NTJ4 1040 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 NDRG4Q9ULP0 352 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms