RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TMEM237Q96Q45 408 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 KCNA7Q96RP8 456 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 KRT23Q9C075 422 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 DCAF16Q9NXF7 216 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 CNOT2Q9NZN8 540 aaKnown RBP1.93□□□□□ -2.1
CD44-239ENST00000639002 CTNNA3Q9UI47 895 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 KIF25Q9UIL4 384 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 CHMP2BQ9UQN3 213 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 CLCA3PQ9Y6N3 262 aa1.93□□□□□ -2.1
CD44-239ENST00000639002 DHX57Q6P158 1386 aaKnown RBP1.93□□□□□ -2.1
CD44-239ENST00000639002 H3BMQ9 156 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 PRPSAP2O60256 369 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 SLITRK3O94933 977 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 HEXBP07686 556 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 HBQ1P09105 142 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 ANXA4P09525 319 aaPredicted RBP1.92□□□□□ -2.1
CD44-239ENST00000639002 CHTF8P0CG12 524 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 RRASP10301 218 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 ANXA3P12429 323 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 AKT2P31751 481 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 CD86P42081 329 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 ATXN3P54252 364 aaPredicted RBP1.92□□□□□ -2.1
CD44-239ENST00000639002 NAPAP54920 295 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 KRTAP12-3P60328 96 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 GABPB1Q06547 395 aaPredicted RBP1.92□□□□□ -2.1
CD44-239ENST00000639002 RGS1Q08116 209 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 LRRC74AQ0VAA2 488 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 MRPL28Q13084 256 aaKnown RBP1.92□□□□□ -2.1
CD44-239ENST00000639002 LAGE3Q14657 143 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 INAQ16352 499 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 CHRFAM7AQ494W8 412 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 PIGGQ5H8A4 983 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 LDLRAP1Q5SW96 308 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 GALNT17Q6IS24 598 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 C6orf120Q7Z4R8 191 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 MFSD6LQ8IWD5 586 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 NRMQ8IXM6 262 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 CYB561D1Q8N8Q1 229 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 OR52E1Q8NGJ3 308 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 UBALD1Q8TB05 177 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 CNIH3Q8TBE1 160 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 NCLNQ969V3 563 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 SYAP1Q96A49 352 aaPredicted RBP1.92□□□□□ -2.1
CD44-239ENST00000639002 TRIM44Q96DX7 344 aaPredicted RBP1.92□□□□□ -2.1
CD44-239ENST00000639002 OR5B2Q96R09 309 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 DMAP1Q9NPF5 467 aaPredicted RBP1.92□□□□□ -2.1
CD44-239ENST00000639002 SPASTQ9UBP0 616 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 CYTH4Q9UIA0 394 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 ATP6V0A2Q9Y487 856 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 CCDC7Q96M83 1385 aa1.92□□□□□ -2.1
CD44-239ENST00000639002 UBE4BO95155 1302 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 TET2Q6N021 2002 aaPredicted RBP1.91□□□□□ -2.1
CD44-239ENST00000639002 ATAD2BQ9ULI0 1458 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 PLEKHH1Q9ULM0 1364 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 OR6C65A6NJZ3 312 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 LRRC30A6NM36 301 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 ANKRD30BLA7E2S9 258 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 SPAG7O75391 227 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 ECI2O75521 394 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 RNH1P13489 461 aaKnown RBP1.91□□□□□ -2.1
CD44-239ENST00000639002 UQCRBP14927 111 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 TNNI3P19429 210 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 CASQ1P31415 396 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 BDKRB1P46663 353 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 TDO2P48775 406 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 BDH1Q02338 343 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 KLHL30Q0D2K2 578 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 CCDC173Q0VFZ6 552 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 EXOSC2Q13868 293 aaKnown RBP1.91□□□□□ -2.1
CD44-239ENST00000639002 PDIA5Q14554 519 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 ABCA11PQ4W5N1 156 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 ZNF621Q6ZSS3 439 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 TBC1D21Q8IYX1 336 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 C6orf223Q8N319 242 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 RNF148Q8N7C7 305 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 FAM71CQ8NEG0 241 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 DENND6BQ8NEG7 585 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 NPBQ8NG41 125 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 SELENOMQ8WWX9 145 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 C14orf79Q96F83 325 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 TSGA13Q96PP4 275 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 OR11A1Q9GZK7 315 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 DPH5Q9H2P9 285 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 ROPN1Q9HAT0 212 aaPredicted RBP1.91□□□□□ -2.1
CD44-239ENST00000639002 VAT1LQ9HCJ6 419 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 ACTR3BQ9P1U1 418 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 NUFIP1Q9UHK0 495 aaKnown RBP1.91□□□□□ -2.1
CD44-239ENST00000639002 ATP6V1HQ9UI12 483 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 AURKCQ9UQB9 309 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 ABCC4O15439 1325 aa1.91□□□□□ -2.1
CD44-239ENST00000639002 CUX2O14529 1486 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 TUBGCP6Q96RT7 1819 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 IGLV2-18A0A075B6J9 118 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 A0A0G2JLM5 398 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 ESYT2A0FGR8 921 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 N4BP1O75113 896 aaKnown RBP1.9□□□□□ -2.11
CD44-239ENST00000639002 TOM1L1O75674 476 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 LALBAP00709 142 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 TGFAP01135 160 aa1.9□□□□□ -2.11
CD44-239ENST00000639002 UQCRC2P22695 453 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms