RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 ZNF781Q8N8C0 355 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 NEURL3Q96EH8 262 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 ZNF300Q96RE9 604 aaPredicted RBP16.29■□□□□ 0.2
CLN3-241ENST00000635861 CCDC106Q9BWC9 280 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 QRSL1Q9H0R6 528 aaKnown RBP16.29■□□□□ 0.2
CLN3-241ENST00000635861 CENPHQ9H3R5 247 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 ALG2Q9H553 416 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 BARX1Q9HBU1 254 aaPredicted RBP16.29■□□□□ 0.2
CLN3-241ENST00000635861 CHRNA9Q9UGM1 479 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 PRSS50Q9UI38 385 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 HAO1Q9UJM8 370 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 MAGED1Q9Y5V3 778 aaPredicted RBP16.29■□□□□ 0.2
CLN3-241ENST00000635861 TM9SF1O15321 606 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 LYZL6O75951 148 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 HTR3AP46098 478 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 RPL14P50914 215 aaKnown RBP16.28■□□□□ 0.2
CLN3-241ENST00000635861 TTMPQ5BVD1 217 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 C1QTNF12Q5T7M4 302 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 FBXW9Q5XUX1 488 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 DTX2Q86UW9 622 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 CMIPQ8IY22 773 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 KBTBD8Q8NFY9 601 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 ZNF563Q8TA94 476 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 PIGXQ8TBF5 258 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 XAGE5Q8WWM1 108 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 ROPN1LQ96C74 230 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.28■□□□□ 0.2
CLN3-241ENST00000635861 MGAT4BQ9UQ53 548 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 YLPM1P49750 1951 aaKnown RBP16.28■□□□□ 0.2
CLN3-241ENST00000635861 CENPVL1A0A0U1RR11 272 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 OR5H1A6NKK0 313 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 HMGB1P1B2RPK0 211 aaPredicted RBP16.28■□□□□ 0.2
CLN3-241ENST00000635861 ITM2AO43736 263 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 OR12D1P0DN82 309 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 IGHV1-2P23083 117 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 ANXA11P50995 505 aaKnown RBP16.28■□□□□ 0.2
CLN3-241ENST00000635861 MAP2K6P52564 334 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 SLC16A1P53985 500 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 HPCAP84074 193 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 LRRC74AQ0VAA2 488 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 CHI3L2Q15782 390 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 STK11Q15831 433 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 NRF1Q16656 503 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 PGGHGQ32M88 737 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 ZNF433Q8N7K0 673 aaPredicted RBP16.28■□□□□ 0.2
CLN3-241ENST00000635861 PMM1Q92871 262 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 ATP6V1G3Q96LB4 118 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 TRAF4Q9BUZ4 470 aaPredicted RBP16.28■□□□□ 0.2
CLN3-241ENST00000635861 CISD1Q9NZ45 108 aaKnown RBP16.28■□□□□ 0.2
CLN3-241ENST00000635861 LIPT1Q9Y234 373 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 TRAPPC4Q9Y296 219 aa16.28■□□□□ 0.2
CLN3-241ENST00000635861 NOSIPQ9Y314 301 aaKnown RBP16.28■□□□□ 0.2
CLN3-241ENST00000635861 ANK3Q12955 4377 aaKnown RBP16.27■□□□□ 0.2
CLN3-241ENST00000635861 ZNF716A6NP11 495 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 KCNJ10P78508 379 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 MAPK14Q16539 360 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 FRRS1Q6ZNA5 592 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 DNM1P46Q6ZS02 220 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 CLEC4FQ8N1N0 589 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 TRIML2Q8N7C3 387 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 APH1AQ96BI3 265 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 REG4Q9BYZ8 158 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 SLCO5A1Q9H2Y9 848 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 CTPS2Q9NRF8 586 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 MARCOQ9UEW3 520 aaPredicted RBP16.27■□□□□ 0.19
CLN3-241ENST00000635861 BTNL2Q9UIR0 455 aa16.27■□□□□ 0.19
CLN3-241ENST00000635861 SHISA9B4DS77 424 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 CRLF1O75462 422 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 CPSF4O95639 269 aaKnown RBP16.26■□□□□ 0.19
CLN3-241ENST00000635861 DHRS4L1P0CG22 281 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 TFPIP10646 304 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 LBPP18428 481 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 PTAFRP25105 342 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 CHI3L1P36222 383 aaPredicted RBP16.26■□□□□ 0.19
CLN3-241ENST00000635861 CDKN1AP38936 164 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 SLC1A6P48664 564 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 AGAP6Q5VW22 663 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 OR7E24Q6IFN5 339 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 OGFOD2Q6N063 350 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 TNFAIP8L2Q6P589 184 aaPredicted RBP16.26■□□□□ 0.19
CLN3-241ENST00000635861 KLHL17Q6TDP4 642 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 TMEM108Q6UXF1 575 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 NEUROG1Q92886 237 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 HS6ST2Q96MM7 605 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 CCDC115Q96NT0 180 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 SLC35A5Q9BS91 424 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 MALT1Q9UDY8 824 aa16.26■□□□□ 0.19
CLN3-241ENST00000635861 C9JVG2 144 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 RNF223E7ERA6 249 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 E9PBE3 544 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 FAAHO00519 579 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 ABCD4O14678 606 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 ZNF208O43345 1280 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 TLX2O43763 284 aaPredicted RBP16.25■□□□□ 0.19
CLN3-241ENST00000635861 EIF1BO60739 113 aaKnown RBP16.25■□□□□ 0.19
CLN3-241ENST00000635861 MAGEA8P43361 318 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 CDH11P55287 796 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 MAGOHP61326 146 aaKnown RBP16.25■□□□□ 0.19
CLN3-241ENST00000635861 PHC1P78364 1004 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 KRTAP1-1Q07627 177 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms