RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 C1orf105O95561 183 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 NPPAP01160 153 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 IGHV4-59P01825 116 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 HOXC4P09017 264 aaPredicted RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 PRPS2P11908 318 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 TMEM11P17152 192 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 IDSP22304 550 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 HNRNPA2B1P22626 353 aaKnown RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 CXCR2P25025 360 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 CA5AP35218 305 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 GNPDA1P46926 289 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 SLC6A12P48065 614 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 MRPL19P49406 292 aaKnown RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 RAP1GDS1P52306 607 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 POLR2JP52435 117 aaKnown RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 METAP1P53582 386 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 ERVPABLB-1P60509 514 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 RPL38P63173 70 aaKnown RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 EMX2Q04743 252 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 CHIT1Q13231 466 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 PRKG2Q13237 762 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 ARHGAP19Q14CB8 494 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 MLF2Q15773 248 aaPredicted RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 WSCD2Q2TBF2 565 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 FBXO48Q5FWF7 155 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 XKR7Q5GH72 579 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 REP15Q6BDI9 236 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 PWWP2BQ6NUJ5 590 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 AGTRAPQ6RW13 159 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 HACD2Q6Y1H2 254 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 THOC6Q86W42 341 aaKnown RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 ZFAND4Q86XD8 727 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 KLHDC8AQ8IYD2 350 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 TBC1D21Q8IYX1 336 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 FBXW8Q8N3Y1 598 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 TSTD1Q8NFU3 115 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 OR52B6Q8NGF0 335 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 OR9A1PQ8NGU1 263 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 SETD7Q8WTS6 366 aaKnown RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 ESAMQ96AP7 390 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 ELMOD3Q96FG2 381 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 CMTM7Q96FZ5 175 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 COX14Q96I36 57 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 RSRC1Q96IZ7 334 aaKnown RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 OR2M4Q96R27 311 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 KCNA7Q96RP8 456 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 HOPXQ9BPY8 73 aaPredicted RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 CENPKQ9BS16 269 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 APOOQ9BUR5 198 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 MCRIP2Q9BUT9 160 aaKnown RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 C1orf50Q9BV19 199 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 DPY30Q9C005 99 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 ATG10Q9H0Y0 220 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 EHD1Q9H4M9 534 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 ZNF385DQ9H6B1 395 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 DCLRE1BQ9H816 532 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 RMND5AQ9H871 391 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 WDR41Q9HAD4 459 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 LRTM1Q9HBL6 345 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 AIG1Q9NVV5 245 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 C1orf109Q9NX04 203 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 TAS2R1Q9NYW7 299 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 ADA2Q9NZK5 511 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 CCDC167Q9P0B6 97 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 STOX2Q9P2F5 926 aaPredicted RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 SLC7A7Q9UM01 511 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 NDRG2Q9UN36 371 aaKnown RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 GTF2A1LQ9UNN4 478 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 AP3M1Q9Y2T2 418 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 TDRKHQ9Y2W6 561 aaKnown RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 L3MBTL1Q9Y468 752 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 POLR3HQ9Y535 204 aaPredicted RBP4.31□□□□□ -1.72
VPS29-212ENST00000621131 TIMM22Q9Y584 194 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 COLEC10Q9Y6Z7 277 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 DOPEY1Q5JWR5 2465 aa4.31□□□□□ -1.72
VPS29-212ENST00000621131 ABCA12Q86UK0 2595 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 ATG2BQ96BY7 2078 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 MYO10Q9HD67 2058 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 A0A087WW49 117 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 LOC730098B7Z3J9 87 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 E9PQ18 207 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 OR7A17O14581 309 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 TRMUO75648 421 aaKnown RBP4.3□□□□□ -1.72
VPS29-212ENST00000621131 APBB3O95704 486 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 SEMA4FO95754 770 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 SOD1P00441 154 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 RAF1P04049 648 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 IL6P05231 212 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 H1F0P07305 194 aaKnown RBP4.3□□□□□ -1.72
VPS29-212ENST00000621131 GPX3P22352 226 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 ME2P23368 584 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 MAT2AP31153 395 aaKnown RBP4.3□□□□□ -1.72
VPS29-212ENST00000621131 TRIM23P36406 574 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 HPCAL1P37235 193 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 CASP2P42575 452 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 ASMTP46597 345 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 RABIFP47224 123 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 CDH11P55287 796 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 FOXA1P55317 472 aa4.3□□□□□ -1.72
VPS29-212ENST00000621131 NME5P56597 212 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms