RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SMNDC1O75940 238 aaKnown RBP eCLIP15.07■□□□□ 01e-7■■■□□ 16.9
TRIM28-215ENST00000601150 CCNA2P20248 432 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 AQP1P29972 269 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 CPA2P48052 419 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 CLK1P49759 484 aaKnown RBP15.07■□□□□ 0
TRIM28-215ENST00000601150 CTBP2P56545 445 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 RNPS1Q15287 305 aaKnown RBP15.07■□□□□ 0
TRIM28-215ENST00000601150 WBP2NLQ6ICG8 309 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 GDF7Q7Z4P5 450 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 MTDHQ86UE4 582 aaKnown RBP15.07■□□□□ 0
TRIM28-215ENST00000601150 KIF18BQ86Y91 864 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 OR8J3Q8NGG0 315 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 OR10A6Q8NH74 314 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 RP9Q8TA86 221 aaKnown RBP15.07■□□□□ 0
TRIM28-215ENST00000601150 RNF128Q8TEB7 428 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 RBM24Q9BX46 236 aaKnown RBP15.07■□□□□ 0
TRIM28-215ENST00000601150 ADAM19Q9H013 955 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 OSGIN1Q9UJX0 560 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 CLEC4AQ9UMR7 237 aa15.07■□□□□ 0
TRIM28-215ENST00000601150 A8MXE2 369 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 ZNF208O43345 1280 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 SNX3O60493 162 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 PRG2P13727 222 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 PRF1P14222 555 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 PCGF2P35227 344 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 DIO1P49895 249 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 MAP2K6P52564 334 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 PCBP3P57721 371 aaKnown RBP15.06■□□□□ 0
TRIM28-215ENST00000601150 CSNK2A1P68400 391 aaPredicted RBP15.06■□□□□ 0
TRIM28-215ENST00000601150 RABL3Q5HYI8 236 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 TMPPEQ6ZT21 453 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 FCRLAQ7L513 359 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 ARMC8Q8IUR7 673 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 ZZZ3Q8IYH5 903 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 ZNF295-AS1Q8N0V1 137 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 SLC43A2Q8N370 569 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 CADM2Q8N3J6 435 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 POU5F2Q8N7G0 328 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 BHLHE22Q8NFJ8 381 aaPredicted RBP15.06■□□□□ 0
TRIM28-215ENST00000601150 OR6K3Q8NGY3 331 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 RCN3Q96D15 328 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 ECSITQ9BQ95 431 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 GALNT8Q9NY28 637 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 KCNN3Q9UGI6 736 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 HDGFL3Q9Y3E1 203 aa15.06■□□□□ 0
TRIM28-215ENST00000601150 MPDZO75970 2070 aa15.05■□□□□ 0
TRIM28-215ENST00000601150 SULT2B1O00204 365 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 FRS3O43559 492 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 TPST1O60507 370 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 PRKD3O94806 890 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 MFN2O95140 757 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 CD8BP10966 210 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 COX4I1P13073 169 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 ENPP1P22413 925 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 CXCR1P25024 350 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 SSTR2P30874 369 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 GZMMP51124 257 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 SORDQ00796 357 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 INTS11Q5TA45 600 aaKnown RBP15.05■□□□□ -0
TRIM28-215ENST00000601150 PATL1Q86TB9 770 aaKnown RBP15.05■□□□□ -0
TRIM28-215ENST00000601150 ABHD3Q8WU67 409 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 DDIT4LQ96D03 193 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 C14orf79Q96F83 325 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 RSPO3Q9BXY4 272 aaPredicted RBP15.05■□□□□ -0
TRIM28-215ENST00000601150 OR11A1Q9GZK7 315 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 OPN3Q9H1Y3 402 aaPredicted RBP15.05■□□□□ -0
TRIM28-215ENST00000601150 PIF1Q9H611 641 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 GP6Q9HCN6 339 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 KLHL28Q9NXS3 571 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 SLC13A4Q9UKG4 626 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 PROCRQ9UNN8 238 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 ADGRG4Q8IZF6 3080 aa15.05■□□□□ -0
TRIM28-215ENST00000601150 TMEM72A0PK05 275 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 SMAD9O15198 467 aaKnown RBP15.04■□□□□ -0
TRIM28-215ENST00000601150 DNPH1O43598 174 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 PMS2P2O95744 297 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 CGAP01215 116 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 FESP07332 822 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 AGTR1P30556 359 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 CPOXP36551 454 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 KIR2DL3P43628 341 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 HOXC5Q00444 222 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 MYBPHQ13203 477 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 SNTB1Q13884 538 aaKnown RBP15.04■□□□□ -0
TRIM28-215ENST00000601150 VMACQ2NL98 169 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 CALHM3Q86XJ0 350 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 TREML1Q86YW5 311 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 ZHX1-C8orf76Q96EF9 292 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 ARL5BQ96KC2 179 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 ZNF559Q9BR84 538 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 TACO1Q9BSH4 297 aaKnown RBP15.04■□□□□ -0
TRIM28-215ENST00000601150 MYLK2Q9H1R3 596 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 EVA1AQ9H8M9 152 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 KLHL13Q9P2N7 655 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 TRAPPC4Q9Y296 219 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 ITPR2Q14571 2701 aa15.04■□□□□ -0
TRIM28-215ENST00000601150 IGHV3-15A0A0B4J1V0 119 aa15.03■□□□□ -0
TRIM28-215ENST00000601150 M0QX08 132 aa15.03■□□□□ -0
TRIM28-215ENST00000601150 AIM2O14862 343 aa15.03■□□□□ -0
TRIM28-215ENST00000601150 GCM2O75603 506 aaPredicted RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms