RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 DCAF13Q9NV06 445 aaKnown RBP17.39■□□□□ 0.37
UPF1-209ENST00000600310 PAQR5Q9NXK6 330 aaPredicted RBP17.39■□□□□ 0.37
UPF1-209ENST00000600310 RPS6KB2Q9UBS0 482 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 RPS6KA6Q9UK32 745 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 TMEM72A0PK05 275 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 TNFSF11O14788 317 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 ARPC2O15144 300 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 ZNF208O43345 1280 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 ZNF682O95780 498 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 GLI4P10075 376 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 TNFRSF1BP20333 461 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 CLK1P49759 484 aaKnown RBP17.38■□□□□ 0.37
UPF1-209ENST00000600310 RASSF2P50749 326 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 PER3P56645 1201 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 SYT14P1Q58G82 188 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 PDSS1Q5T2R2 415 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 SEM1Q6ZVN7 128 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 ATG4DQ86TL0 474 aaPredicted RBP17.38■□□□□ 0.37
UPF1-209ENST00000600310 OR10Q1Q8NGQ4 319 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 OR10D3Q8NH80 312 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 DNAJA4Q8WW22 397 aaPredicted RBP17.38■□□□□ 0.37
UPF1-209ENST00000600310 TRIB1Q96RU8 372 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 CLCF1Q9UBD9 225 aa17.38■□□□□ 0.37
UPF1-209ENST00000600310 A0A0B4J2E0 115 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 A0A1B0GX12 115 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 KDM4EB2RXH2 506 aaPredicted RBP17.37■□□□□ 0.37
UPF1-209ENST00000600310 PDE5AO76074 875 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 CCNA2P20248 432 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 CXCR1P25024 350 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 SLC7A1P30825 629 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 EIF1AXP47813 144 aaKnown RBP17.37■□□□□ 0.37
UPF1-209ENST00000600310 OR1E2P47887 323 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 NUP107P57740 925 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 PMPCAQ10713 525 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 SGCBQ16585 318 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 HBMQ6B0K9 141 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 ZNF613Q6PF04 617 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 ULK3Q6PHR2 472 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 NCCRP1Q6ZVX7 275 aaPredicted RBP17.37■□□□□ 0.37
UPF1-209ENST00000600310 VTCN1Q7Z7D3 282 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 FAM26EQ8N5C1 309 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 WNT2BQ93097 391 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 CCDC120Q96HB5 630 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 ZNF845Q96IR2 970 aaPredicted RBP17.37■□□□□ 0.37
UPF1-209ENST00000600310 NSMCE2Q96MF7 247 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 MUC13Q9H3R2 512 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 COQ10BQ9H8M1 238 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 ACTR3BQ9P1U1 418 aa17.37■□□□□ 0.37
UPF1-209ENST00000600310 SAMD4AQ9UPU9 718 aaKnown RBP17.37■□□□□ 0.37
UPF1-209ENST00000600310 MBD3L4A6NDZ8 208 aaPredicted RBP17.36■□□□□ 0.37
UPF1-209ENST00000600310 MBD3L3A6NE82 208 aaPredicted RBP17.36■□□□□ 0.37
UPF1-209ENST00000600310 MBD3L5A6NJ08 208 aaPredicted RBP17.36■□□□□ 0.37
UPF1-209ENST00000600310 CXCL13O43927 109 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 TFPIP10646 304 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 TIMP3P35625 211 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 CARD18P57730 90 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 ADORA2A-AS1P86434 159 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 TRIM25Q14258 630 aaKnown RBP17.36■□□□□ 0.37
UPF1-209ENST00000600310 IFI44LQ53G44 452 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 ALG10BQ5I7T1 473 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 ENTPD8Q5MY95 495 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 TMPPEQ6ZT21 453 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 FKBP9P1Q75LS8 142 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 MBD3L2Q8NHZ7 208 aaPredicted RBP17.36■□□□□ 0.37
UPF1-209ENST00000600310 GEMIN6Q8WXD5 167 aaKnown RBP17.36■□□□□ 0.37
UPF1-209ENST00000600310 OSTF1Q92882 214 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 SLC47A1Q96FL8 570 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 HSH2DQ96JZ2 352 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 CLPTM1LQ96KA5 538 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 OR5B2Q96R09 309 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 OR11A1Q9GZK7 315 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 SELENONQ9NZV5 590 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.36■□□□□ 0.37
UPF1-209ENST00000600310 HDGFL3Q9Y3E1 203 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 ZNF175Q9Y473 711 aa17.36■□□□□ 0.37
UPF1-209ENST00000600310 A0A1W2PNR3 127 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 WIPF3A6NGB9 483 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 DNAJC8O75937 253 aaPredicted RBP17.35■□□□□ 0.37
UPF1-209ENST00000600310 TOXO94900 526 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 AGFG2O95081 481 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 PNMTP11086 282 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 SWT1Q5T5J6 900 aaKnown RBP17.35■□□□□ 0.37
UPF1-209ENST00000600310 RIPPLY2Q5TAB7 128 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 PGM2L1Q6PCE3 622 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 TSPYL5Q86VY4 417 aaPredicted RBP17.35■□□□□ 0.37
UPF1-209ENST00000600310 ADAMTS16Q8TE57 1224 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 RND1Q92730 232 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 SLC38A4Q969I6 547 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 DDIT4LQ96D03 193 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 ARL5BQ96KC2 179 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 POTEKPQ9BYX7 375 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 POLR2J2Q9GZM3 115 aaKnown RBP17.35■□□□□ 0.37
UPF1-209ENST00000600310 POLR2J3Q9H1A7 115 aaKnown RBP17.35■□□□□ 0.37
UPF1-209ENST00000600310 TIGARQ9NQ88 270 aa17.35■□□□□ 0.37
UPF1-209ENST00000600310 A0A087WUJ7 227 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 ZC3H12DA2A288 527 aaKnown RBP17.34■□□□□ 0.37
UPF1-209ENST00000600310 TRAPPC13A5PLN9 417 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 SLC22A20A6NK97 555 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 ELOA3DA6NLF2 546 aaPredicted RBP17.34■□□□□ 0.37
UPF1-209ENST00000600310 CPSF4LA6NMK7 179 aaKnown RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms