RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ZCCHC12Q6PEW1 402 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 CASP12Q6UXS9 341 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 TMPPEQ6ZT21 453 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 TRMT10CQ7L0Y3 403 aaKnown RBP7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 LCA5Q86VQ0 697 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 SGMS2Q8NHU3 365 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 OR5P2Q8WZ92 322 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 APH1AQ96BI3 265 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 ZG16BQ96DA0 208 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 ZMYND19Q96E35 227 aaPredicted RBP7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 ZNF764Q96H86 408 aaPredicted RBP7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 PPP1R36Q96LQ0 422 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 SORCS2Q96PQ0 1159 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 INPP5KQ9BT40 448 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 TXLNGYQ9BZA5 131 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 GRIP2Q9C0E4 1043 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 ADAM19Q9H013 955 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 GP6Q9HCN6 339 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 SLC7A10Q9NS82 523 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 MOKQ9UQ07 419 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 EPPK1P58107 5090 aaKnown RBP7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 GOLGA8QA0A0J9YX86 632 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 LRP5LA4QPB2 252 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 GOLGA8OA6NCC3 632 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 GOLGA8NF8WBI6 632 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 H7C417 338 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 ETV2O00321 342 aaPredicted RBP7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 COPEO14579 308 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 CSTAP01040 98 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 NEFHP12036 1026 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 SLC25A16P16260 332 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 EGR1P18146 543 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 MATN1P21941 496 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 PTAFRP25105 342 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 CFPP27918 469 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 ALDH3A1P30838 453 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 LCN1P31025 176 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 IL2RGP31785 369 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 CRHR1P34998 444 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 EFNA4P52798 201 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 OR2B6P58173 313 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 TUBA1BP68363 451 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 TUBA4AP68366 448 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 FUT5Q11128 374 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 MLC1Q15049 377 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 MST1LQ2TV78 715 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 PGS1Q32NB8 556 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 CCDC153Q494R4 210 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 ATP6AP1LQ52LC2 224 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 HIKESHIQ53FT3 197 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 TSPO2Q5TGU0 170 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 IL23RQ5VWK5 629 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 OR4F3Q6IEY1 312 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 TNFAIP8L2Q6P589 184 aaPredicted RBP7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 TUBA1AQ71U36 451 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 C6orf120Q7Z4R8 191 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 MTDHQ86UE4 582 aaKnown RBP7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 ANKRD46Q86W74 232 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 OR56A1Q8NGH5 318 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 ZNF563Q8TA94 476 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 ANP32BQ92688 251 aaKnown RBP7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 FOXN4Q96NZ1 517 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 LAT2Q9GZY6 243 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 HOXD1Q9GZZ0 328 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 IQCGQ9H095 443 aaKnown RBP7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 L2HGDHQ9H9P8 463 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 SEC61A2Q9H9S3 476 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 ACER3Q9NUN7 267 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 ASB6Q9NWX5 421 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 SLC17A7Q9P2U7 560 aa7.56□□□□□ -1.2
SHKBP1-220ENST00000599716 IGKV3D-15A0A087WSY6 115 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 RNF103-CHMP3A0A140T963 221 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 ZC3H12DA2A288 527 aaKnown RBP7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 PRAMEF27A3QJZ7 478 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 VWC2LB2RUY7 222 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 KIAA0513O60268 411 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 EIF4E2O60573 245 aaKnown RBP7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 SPAG7O75391 227 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 MRPL33O75394 65 aaKnown RBP7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 CHEK2O96017 543 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 OR12D1P0DN82 309 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 G6PDP11413 515 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 IMPDH2P12268 514 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 KRT4P19013 534 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 PGM1P36871 562 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 ASMTP46597 345 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 DEFA6Q01524 100 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 ZNF141Q15928 474 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 XKR7Q5GH72 579 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 VHLLQ6RSH7 139 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 KLHL17Q6TDP4 642 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 R3HCC1LQ7Z5L2 792 aaKnown RBP7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 P2RY8Q86VZ1 359 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 ADGRG3Q86Y34 549 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 ZCCHC24Q8N2G6 241 aaKnown RBP7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 FNDC5Q8NAU1 212 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 PSMA8Q8TAA3 256 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 MTERF3Q96E29 417 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 METTL2AQ96IZ6 378 aaKnown RBP7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 SLC35G5Q96KT7 338 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms