RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 CYP4Z1Q86W10 505 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 LSMEM1Q8N8F7 131 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 OR2T29Q8NH02 315 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 FAM57AQ8TBR7 257 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 TIMP4Q99727 224 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 PKP2Q99959 881 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 TRIM2Q9C040 744 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 PTGES2Q9H7Z7 377 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 CTPS2Q9NRF8 586 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 DNAJB9Q9UBS3 223 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 OR2M5A3KFT3 312 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 CPSF4LA6NMK7 179 aaKnown RBP13.54□□□□□ -0.24
TRIM28-207ENST00000597136 LRRTM2O43300 516 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 DEAF1O75398 565 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-207ENST00000597136 BAG2O95816 211 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 NUDT14O95848 222 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 LDLRP01130 860 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 UQCRBP14927 111 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 ANPEPP15144 967 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 PGCP20142 388 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 FUT4P22083 530 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 IDH2P48735 452 aaKnown RBP13.54□□□□□ -0.24
TRIM28-207ENST00000597136 OR1Q1Q15612 314 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 HMBOX1Q6NT76 420 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 PLEKHM3Q6ZWE6 761 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 AMIGO2Q86SJ2 522 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 CD163Q86VB7 1156 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 FJX1Q86VR8 437 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 PQLC1Q8N2U9 271 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 RPRMLQ8N4K4 120 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 ADAMTS16Q8TE57 1224 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 ABTB1Q969K4 478 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-207ENST00000597136 PRRC1Q96M27 445 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 POLR2J2Q9GZM3 115 aaKnown RBP13.54□□□□□ -0.24
TRIM28-207ENST00000597136 POLR2J3Q9H1A7 115 aaKnown RBP13.54□□□□□ -0.24
TRIM28-207ENST00000597136 RNPEPL1Q9HAU8 725 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 TMEM27Q9HBJ8 222 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 ALKBH4Q9NXW9 302 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 STX18Q9P2W9 335 aaKnown RBP13.54□□□□□ -0.24
TRIM28-207ENST00000597136 RHCGQ9UBD6 479 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 NKX1-2Q9UD57 310 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-207ENST00000597136 ERRFI1Q9UJM3 462 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-207ENST00000597136 PRDM4Q9UKN5 801 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 ZNF337Q9Y3M9 751 aa13.54□□□□□ -0.24
TRIM28-207ENST00000597136 KDM4EB2RXH2 506 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-207ENST00000597136 EFNA2O43921 213 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 OR5F1O95221 314 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 ATP6V1G2O95670 118 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 THY1P04216 161 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 CA7P43166 264 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 TAS2R41P59536 307 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 COPZ1P61923 177 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 GANABQ14697 944 aaKnown RBP13.53□□□□□ -0.24
TRIM28-207ENST00000597136 WBP2NLQ6ICG8 309 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 ZNF613Q6PF04 617 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 CADM2Q8N3J6 435 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 POC1BQ8TC44 478 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 CENPNQ96H22 339 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-207ENST00000597136 DHRS1Q96LJ7 313 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 FNDC11Q9BVV2 318 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 NMNAT1Q9HAN9 279 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-207ENST00000597136 NTN4Q9HB63 628 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 MED17Q9NVC6 651 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 RIMS3Q9UJD0 308 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 TESMINQ9Y4I5 508 aa13.53□□□□□ -0.24
TRIM28-207ENST00000597136 A0A1B0GWA3 101 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 TRAPPC13A5PLN9 417 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 OR14I1A6ND48 311 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 CCL21O00585 134 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 PRRG2O14669 202 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 ADAMDEC1O15204 470 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 OPN1LWP04000 364 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 RNF224P0DH78 156 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 IL11P20809 199 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 RRM2P31350 389 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 SLC1A3P43003 542 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 SPIBQ01892 262 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 QPRTQ15274 297 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 TMEM44Q2T9K0 475 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 PLPPR5Q32ZL2 321 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 NHSL2Q5HYW2 709 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 ZNF585AQ6P3V2 769 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 OFCC1Q8IZS5 231 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 PIK3C3Q8NEB9 887 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 RELTQ969Z4 430 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 SARAFQ96BY9 339 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 SLC41A3Q96GZ6 507 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 WDYHV1Q96HA8 205 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 SFXN2Q96NB2 322 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 BDH2Q9BUT1 245 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 ACER3Q9NUN7 267 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 VNN3Q9NY84 501 aa13.52□□□□□ -0.25
TRIM28-207ENST00000597136 C6orf203Q9P0P8 240 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-207ENST00000597136 CENPEQ02224 2701 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 A0A0B4J2E0 115 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 A0A1B0GX12 115 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 A0A1W2PRQ8 180 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 H0YC42 278 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 GNGT2O14610 69 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 LYPD3O95274 346 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms