RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 THAP4Q8WY91 577 aa14.13□□□□□ -0.15
UPF1-204ENST00000596842 ACOT12Q8WYK0 555 aa14.13□□□□□ -0.15
UPF1-204ENST00000596842 SDF2Q99470 211 aa14.13□□□□□ -0.15
UPF1-204ENST00000596842 PIGUQ9H490 435 aa14.13□□□□□ -0.15
UPF1-204ENST00000596842 ISYNA1Q9NPH2 558 aa14.13□□□□□ -0.15
UPF1-204ENST00000596842 IFT46Q9NQC8 304 aa14.13□□□□□ -0.15
UPF1-204ENST00000596842 A0A1W2PQU0 124 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 LEUTXA8MZ59 168 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 IDSB3KWA1 339 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 SMAD9O15198 467 aaKnown RBP14.12□□□□□ -0.15
UPF1-204ENST00000596842 KHDRBS3O75525 346 aaKnown RBP14.12□□□□□ -0.15
UPF1-204ENST00000596842 EML2O95834 649 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 DRD3P35462 400 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 CST6Q15828 149 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 TIGD3Q6B0B8 471 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 SRFBP1Q8NEF9 429 aaKnown RBP14.12□□□□□ -0.15
UPF1-204ENST00000596842 TSACCQ96A04 125 aaPredicted RBP14.12□□□□□ -0.15
UPF1-204ENST00000596842 TRIM43Q96BQ3 446 aaPredicted RBP14.12□□□□□ -0.15
UPF1-204ENST00000596842 MS4A4EQ96PG1 132 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 USB1Q9BQ65 265 aaKnown RBP14.12□□□□□ -0.15
UPF1-204ENST00000596842 SOSTQ9BQB4 213 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 SRMSQ9H3Y6 488 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 C11orf49Q9H6J7 331 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 MARK1Q9P0L2 795 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 RCE1Q9Y256 329 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 TRBV2A0A0J9YWF9 115 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 H0Y8X5 98 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 H7C2Y5 167 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 LGALS8O00214 317 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 FLRT2O43155 660 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 IGHA1P01876 353 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 PRKAR1BP31321 381 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 TMEM44Q2T9K0 475 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 ADAMTSL4Q6UY14 1074 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 FTMTQ8N4E7 242 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 LINC00469Q8N7U9 141 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 ZNF649Q9BS31 505 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 ADAM18Q9Y3Q7 739 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 GXYLT2A0PJZ3 443 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 OR2W5A6NFC9 320 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 ADRB1P08588 477 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 SBK2P0C263 348 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 ANKRD34CP0C6C1 535 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 MYOGP15173 224 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 ZNF3P17036 446 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 TLX1P31314 330 aaPredicted RBP14.12□□□□□ -0.15
UPF1-204ENST00000596842 ACTR1BP42025 376 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 FXYD6P3P58550 94 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 ACTR1AP61163 376 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 TRA2BP62995 288 aaKnown RBP14.12□□□□□ -0.15
UPF1-204ENST00000596842 STX4Q12846 297 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 MLC1Q15049 377 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 PYHIN1Q6K0P9 492 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 ENPP7Q6UWV6 458 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 RPLP0P6Q8NHW5 317 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 LGALS14Q8TCE9 139 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 SFXN5Q8TD22 340 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 ZC3HAV1LQ96H79 300 aaKnown RBP14.12□□□□□ -0.15
UPF1-204ENST00000596842 HHIPL1Q96JK4 782 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 C1QTNF7Q9BXJ2 289 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 IGFLR1Q9H665 355 aa14.12□□□□□ -0.15
UPF1-204ENST00000596842 ZNF346Q9UL40 294 aaKnown RBP14.12□□□□□ -0.15
UPF1-204ENST00000596842 SEC14L5O43304 696 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 SLC22A5O76082 557 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 RCBTB2O95199 551 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 WNT1P04628 370 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 PEBP1P30086 187 aaKnown RBP14.11□□□□□ -0.15
UPF1-204ENST00000596842 FNTBP49356 437 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 CCR4P51679 360 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 FZD5Q13467 585 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 ANGPT1Q15389 498 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 ST3GAL2Q16842 350 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 NDUFAF6Q330K2 333 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 TMEM52BQ4KMG9 183 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 PLA1AQ53H76 456 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 ZBTB37Q5TC79 503 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 KANSL1Q7Z3B3 1105 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 ZAR1Q86SH2 424 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 GATSQ8NAP1 163 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 PPA2Q9H2U2 334 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 ZNF768Q9H5H4 540 aaKnown RBP14.11□□□□□ -0.15
UPF1-204ENST00000596842 HCN3Q9P1Z3 774 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 CES1P1Q9UKY3 287 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 MAFFQ9ULX9 164 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 EXOGQ9Y2C4 368 aaKnown RBP14.11□□□□□ -0.15
UPF1-204ENST00000596842 SLC22A31A6NKX4 558 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 CPMP14384 443 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 TSPAN5P62079 268 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 SHC2P98077 582 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 RPE65Q16518 533 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 DCST2Q5T1A1 773 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 TRILQ7L0X0 811 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 CNOT9Q92600 299 aaKnown RBP14.11□□□□□ -0.15
UPF1-204ENST00000596842 NKX3-1Q99801 234 aaPredicted RBP14.11□□□□□ -0.15
UPF1-204ENST00000596842 TMEM27Q9HBJ8 222 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 HRH3Q9Y5N1 445 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 CHD9Q3L8U1 2897 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 ARHGEF17Q96PE2 2063 aaPredicted RBP14.11□□□□□ -0.15
UPF1-204ENST00000596842 TTLL8A6PVC2 850 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 KAT7O95251 611 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms