RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 A0A0G2JPF8 293 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 A0A1W2PP18 115 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 HNRNPCL2B2RXH8 293 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 HNRNPCL3B7ZW38 293 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 C16orf97H3BN30 126 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 HNRNPCL1O60812 293 aaKnown RBP13.45□□□□□ -0.26
TRIM28-205ENST00000595028 PRKD3O94806 890 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 HRGP04196 525 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 FESP07332 822 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 THBS1P07996 1170 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 HNRNPCL4P0DMR1 293 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 PPIBP23284 216 aaKnown RBP13.45□□□□□ -0.26
TRIM28-205ENST00000595028 DIO1P49895 249 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 CSNK2A1P68400 391 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-205ENST00000595028 LARS2Q15031 903 aaKnown RBP13.45□□□□□ -0.26
TRIM28-205ENST00000595028 FBXW10Q5XX13 1052 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 STK32CQ86UX6 486 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 TUSC5Q8IXB3 177 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 BBS10Q8TAM1 723 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 MAL2Q969L2 176 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 WFIKKN1Q96NZ8 548 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 PSD2Q9BQI7 771 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 TACO1Q9BSH4 297 aaKnown RBP13.45□□□□□ -0.26
TRIM28-205ENST00000595028 MED18Q9BUE0 208 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 GSX1Q9H4S2 264 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-205ENST00000595028 BCO1Q9HAY6 547 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 CACYBPQ9HB71 228 aaKnown RBP13.45□□□□□ -0.26
TRIM28-205ENST00000595028 BCL2L10Q9HD36 194 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 RLIMQ9NVW2 624 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 KLHL9Q9P2J3 617 aa13.45□□□□□ -0.26
TRIM28-205ENST00000595028 ING1Q9UK53 422 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-205ENST00000595028 NSD1Q96L73 2696 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-205ENST00000595028 SULT2B1O00204 365 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 CYTIPO60759 359 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 ARAFP10398 606 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 TFPIP10646 304 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 NCF2P19878 526 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-205ENST00000595028 KLK2P20151 261 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 FKBP2P26885 142 aaKnown RBP13.44□□□□□ -0.26
TRIM28-205ENST00000595028 TACR3P29371 465 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 SLC1A3P43003 542 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 CLK1P49759 484 aaKnown RBP13.44□□□□□ -0.26
TRIM28-205ENST00000595028 POLR2HP52434 150 aaKnown RBP13.44□□□□□ -0.26
TRIM28-205ENST00000595028 POU4F3Q15319 338 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 ZSWIM7Q19AV6 140 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 GCNT6Q5T4J0 391 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 ABLIM2Q6H8Q1 611 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 TFAP2EQ6VUC0 442 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 BEND4Q6ZU67 534 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 ZNF550Q7Z398 422 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 NUFIP2Q7Z417 695 aaKnown RBP13.44□□□□□ -0.26
TRIM28-205ENST00000595028 ADGRG3Q86Y34 549 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 TGIF2LYQ8IUE0 185 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 C10orf111Q8N326 155 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 NINJ1Q92982 152 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 ARL5BQ96KC2 179 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 KLHL4Q9C0H6 718 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 OR11A1Q9GZK7 315 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 IKZF5Q9H5V7 419 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 FANCFQ9NPI8 374 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 ZNF226Q9NYT6 803 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-205ENST00000595028 ST6GALNAC2Q9UJ37 374 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 OSGIN1Q9UJX0 560 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 HDGFL3Q9Y3E1 203 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 CHST2Q9Y4C5 530 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 PRR14LQ5THK1 2151 aa13.44□□□□□ -0.26
TRIM28-205ENST00000595028 TMED7-TICAM2A0A0A6YYA0 188 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 C5orf58C9J3I9 102 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 CASKO14936 926 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 SIAH2O43255 324 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 ZNF208O43345 1280 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 DNPH1O43598 174 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 PMS2P2O95744 297 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 YES1P07947 543 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 GKN3PP0CG01 181 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 CRYGSP22914 178 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 RASGEF1BQ0VAM2 473 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 PAMR1Q6UXH9 720 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 STAC2Q6ZMT1 411 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 LSRQ86X29 649 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-205ENST00000595028 ZHX1-C8orf76Q96EF9 292 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 CPPED1Q9BRF8 314 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-205ENST00000595028 SPATA9Q9BWV2 254 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 TMEM120AQ9BXJ8 343 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 LIME1Q9H400 295 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 LEF1Q9UJU2 399 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-205ENST00000595028 CORO2BQ9UQ03 480 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 IFT52Q9Y366 437 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 TMED7Q9Y3B3 224 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 JMJD1CQ15652 2540 aa13.43□□□□□ -0.26
TRIM28-205ENST00000595028 A0A1W2PPR1 153 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 TMEM72A0PK05 275 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 DEFB108AA8MXU0 73 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 ANGPT2O15123 496 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 PGM3O95394 542 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 ETS2P15036 469 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 PPP3CBP16298 524 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 CCNA2P20248 432 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 ACAA2P42765 397 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms