RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 GTF2IRD2Q86UP8 949 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 CALHM3Q86XJ0 350 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 ADGRG3Q86Y34 549 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 TREML1Q86YW5 311 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 ARMC8Q8IUR7 673 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 GMPPAQ96IJ6 420 aaPredicted RBP10.66□□□□□ -0.7
LIG3-213ENST00000590630 OR5B2Q96R09 309 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 SPOCK3Q9BQ16 436 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 ADAM19Q9H013 955 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 ENKD1Q9H0I2 346 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 COQ10BQ9H8M1 238 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 EVA1AQ9H8M9 152 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 EFCAB1Q9HAE3 211 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 GLRX2Q9NS18 164 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 JKAMPQ9P055 326 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 OSGIN1Q9UJX0 560 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 PACSIN3Q9UKS6 424 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 AP3M1Q9Y2T2 418 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 ARL2BPQ9Y2Y0 163 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 NOTCH2Q04721 2471 aa10.66□□□□□ -0.7
LIG3-213ENST00000590630 TMED7-TICAM2A0A0A6YYA0 188 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 A0A1W2PNR3 127 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 SYT5O00445 386 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 AIM2O14862 343 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 ZNF208O43345 1280 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 MFN2O95140 757 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 PLGP00747 810 aaPredicted RBP10.65□□□□□ -0.7
LIG3-213ENST00000590630 PRG2P13727 222 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 TACR3P29371 465 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 PRDX6P30041 224 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 PEX19P40855 299 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 DIO1P49895 249 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 AGFG1P52594 562 aaKnown RBP10.65□□□□□ -0.7
LIG3-213ENST00000590630 CSNK2A1P68400 391 aaPredicted RBP10.65□□□□□ -0.7
LIG3-213ENST00000590630 RNPS1Q15287 305 aaKnown RBP10.65□□□□□ -0.7
LIG3-213ENST00000590630 GUSBP1Q15486 140 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 ZNF787Q6DD87 383 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 HACD2Q6Y1H2 254 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 FAM214BQ7L5A3 538 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 SLC43A2Q8N370 569 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 CADM2Q8N3J6 435 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 CNEP1R1Q8N9A8 125 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 RNF128Q8TEB7 428 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 RNASE6Q93091 150 aaKnown RBP10.65□□□□□ -0.7
LIG3-213ENST00000590630 MARVELD3Q96A59 401 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 DDIT4LQ96D03 193 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 HOPXQ9BPY8 73 aaPredicted RBP10.65□□□□□ -0.7
LIG3-213ENST00000590630 RSPO3Q9BXY4 272 aaPredicted RBP10.65□□□□□ -0.7
LIG3-213ENST00000590630 SRXN1Q9BYN0 137 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 SLC24A3Q9HC58 644 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 GP6Q9HCN6 339 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 KLHL28Q9NXS3 571 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 FAM53CQ9NYF3 392 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 SLC13A4Q9UKG4 626 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 TMED7Q9Y3B3 224 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 EMC9Q9Y3B6 208 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 HDGFL3Q9Y3E1 203 aa10.65□□□□□ -0.7
LIG3-213ENST00000590630 TEX15Q9BXT5 2789 aa10.65□□□□□ -0.71
LIG3-213ENST00000590630 FBN2P35556 2912 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 SULT2B1O00204 365 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 MSTNO14793 375 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 FRS3O43559 492 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 DNPH1O43598 174 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 TPST1O60507 370 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 SS18L1O75177 396 aaPredicted RBP10.64□□□□□ -0.71
LIG3-213ENST00000590630 GCM2O75603 506 aaPredicted RBP10.64□□□□□ -0.71
LIG3-213ENST00000590630 DCTN3O75935 186 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 PMS2P2O95744 297 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 FAM107AO95990 144 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 C8BP07358 591 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 TFPIP10646 304 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 CXCR1P25024 350 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 KIR2DL2P43627 348 aaPredicted RBP10.64□□□□□ -0.71
LIG3-213ENST00000590630 CTBP2P56545 445 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 DMTNQ08495 405 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 MYBPHQ13203 477 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 VEZF1Q14119 521 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 MEX3BQ6ZN04 569 aaKnown RBP10.64□□□□□ -0.71
LIG3-213ENST00000590630 TMPPEQ6ZT21 453 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 CCDC80Q76M96 950 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 FCRLAQ7L513 359 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 MCEMP1Q8IX19 187 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 LSMEM1Q8N8F7 131 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 ANKS4BQ8N8V4 417 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 RASSF5Q8WWW0 418 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 STARD4Q96DR4 205 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 ZNF583Q96ND8 569 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 LRRC37BQ96QE4 947 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 CCT8L2Q96SF2 557 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 GPATCH1Q9BRR8 931 aaKnown RBP10.64□□□□□ -0.71
LIG3-213ENST00000590630 PIF1Q9H611 641 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 TESQ9UGI8 421 aaKnown RBP10.64□□□□□ -0.71
LIG3-213ENST00000590630 TRAPPC4Q9Y296 219 aa10.64□□□□□ -0.71
LIG3-213ENST00000590630 FREM1Q5H8C1 2179 aa10.63□□□□□ -0.71
LIG3-213ENST00000590630 TMEM72A0PK05 275 aa10.63□□□□□ -0.71
LIG3-213ENST00000590630 A8MXE2 369 aa10.63□□□□□ -0.71
LIG3-213ENST00000590630 FAM220BPB1ANY3 271 aa10.63□□□□□ -0.71
LIG3-213ENST00000590630 M0QX08 132 aa10.63□□□□□ -0.71
LIG3-213ENST00000590630 NDUFAB1O14561 156 aa10.63□□□□□ -0.71
LIG3-213ENST00000590630 SHOX2O60902 331 aaPredicted RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms