RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	CHRNA9	Q9UGM1	479 aa		11.86	□□□□□ -0.51
SREBF1-223	ENST00000584760	DCTN4	Q9UJW0	460 aa		11.86	□□□□□ -0.51
SREBF1-223	ENST00000584760	ING1	Q9UK53	422 aa	Predicted RBP	11.86	□□□□□ -0.51
SREBF1-223	ENST00000584760	ZNF443	Q9Y2A4	671 aa	Predicted RBP	11.86	□□□□□ -0.51
SREBF1-223	ENST00000584760	ZNF469	Q96JG9	3925 aa	Predicted RBP	11.86	□□□□□ -0.51
SREBF1-223	ENST00000584760	IGHV3-15	A0A0B4J1V0	119 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760		A0A1W2PP18	115 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	SMAD9	O15198	467 aa	Known RBP	11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	ATE1	O95260	518 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	IDH2	P48735	452 aa	Known RBP	11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	DIO1	P49895	249 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	EPS8	Q12929	822 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	PRAMEF8	Q5VWM4	474 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	PRAMEF7	Q5VXH5	474 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	GTF2IRD2B	Q6EKJ0	949 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	GTF2IRD2	Q86UP8	949 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	LSR	Q86X29	649 aa	Predicted RBP	11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	VRK2	Q86Y07	508 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	ADGRG3	Q86Y34	549 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	SLC43A2	Q8N370	569 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	OR52P1P	Q8NH57	321 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	MAL2	Q969L2	176 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	REXO5	Q96IC2	774 aa	Known RBP	11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	MDFI	Q99750	246 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	RABEP2	Q9H5N1	569 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	IKZF5	Q9H5V7	419 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	BCL2L10	Q9HD36	194 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	CHST2	Q9Y4C5	530 aa		11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	RAI1	Q7Z5J4	1906 aa	Predicted RBP	11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	FLNA	P21333	2647 aa	Known RBP	11.85	□□□□□ -0.51
SREBF1-223	ENST00000584760	PRR14L	Q5THK1	2151 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760		A0A0G2JND7	137 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760		A0A0G2JPF8	293 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	CFAP73	A6NFT4	308 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	HNRNPCL2	B2RXH8	293 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	HNRNPCL3	B7ZW38	293 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	C16orf97	H3BN30	126 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	CYTIP	O60759	359 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	HNRNPCL1	O60812	293 aa	Known RBP	11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	HRG	P04196	525 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	FES	P07332	822 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	HNRNPCL4	P0DMR1	293 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	ARAF	P10398	606 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	HOXC12	P31275	282 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	ACAA2	P42765	397 aa	Known RBP	11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	HTR3A	P46098	478 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	KCNJ5	P48544	419 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	TMEM201	Q5SNT2	666 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	ABLIM2	Q6H8Q1	611 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	DLEU7	Q6UYE1	221 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	TFAP2E	Q6VUC0	442 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	TMPPE	Q6ZT21	453 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	ZNF550	Q7Z398	422 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	TUSC5	Q8IXB3	177 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	ZNF440	Q8IYI8	595 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	ARL5B	Q96KC2	179 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	WFIKKN1	Q96NZ8	548 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	PSD2	Q9BQI7	771 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	CPPED1	Q9BRF8	314 aa	Predicted RBP	11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	OR11A1	Q9GZK7	315 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	C12orf49	Q9H741	205 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	BCO1	Q9HAY6	547 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	KLHL28	Q9NXS3	571 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	KLHL9	Q9P2J3	617 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	NDRG3	Q9UGV2	375 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	OSGIN1	Q9UJX0	560 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	TRIM33	Q9UPN9	1127 aa		11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	SPIN1	Q9Y657	262 aa	Predicted RBP	11.84	□□□□□ -0.51
SREBF1-223	ENST00000584760	UQCRHL	A0A096LP55	91 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	TMED7-TICAM2	A0A0A6YYA0	188 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760		A0A1W2PPR1	153 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	TMEM247	A6NEH6	219 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	DEFB108A	A8MXU0	73 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	SULT2B1	O00204	365 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	SIAH2	O43255	324 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	PRKD3	O94806	890 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	PGM3	O95394	542 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	PMS2P2	O95744	297 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	GKN3P	P0CG01	181 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	UQCRB	P14927	111 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	NCF2	P19878	526 aa	Predicted RBP	11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	CRYGS	P22914	178 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	PPIB	P23284	216 aa	Known RBP	11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	TACR3	P29371	465 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	SLC1A3	P43003	542 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	POLR2H	P52434	150 aa	Known RBP	11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	CSNK2A1	P68400	391 aa	Predicted RBP	11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	LARS2	Q15031	903 aa	Known RBP	11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	POU4F3	Q15319	338 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	EXOC3L2	Q2M3D2	409 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	GCNT6	Q5T4J0	391 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	STAC2	Q6ZMT1	411 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	C22orf34	Q6ZV56	151 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	NUFIP2	Q7Z417	695 aa	Known RBP	11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	STK32C	Q86UX6	486 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	PRIMA1	Q86XR5	153 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	CLIP4	Q8N3C7	705 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	BBS10	Q8TAM1	723 aa		11.83	□□□□□ -0.52
SREBF1-223	ENST00000584760	TACO1	Q9BSH4	297 aa	Known RBP	11.83	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms