RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 TMED7-TICAM2A0A0A6YYA0 188 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 EEF1E1-BLOC1S5C9J1V9 151 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 MSTNO14793 375 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 EEF1E1O43324 174 aaKnown RBP17.27■□□□□ 0.36
SS18-208ENST00000577751 ZNF208O43345 1280 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 TPST1O60507 370 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 SERPINB7O75635 380 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 MFN2O95140 757 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 COX4I1P13073 169 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 AQP1P29972 269 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 GTF2IRD2BQ6EKJ0 949 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 WBP2NLQ6ICG8 309 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 PPP4R4Q6NUP7 873 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 GTF2IRD2Q86UP8 949 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 COMTD1Q86VU5 262 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 TREML1Q86YW5 311 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 SLC30A8Q8IWU4 369 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 MCEMP1Q8IX19 187 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 POU5F2Q8N7G0 328 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 CNEP1R1Q8N9A8 125 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 ROBO4Q8WZ75 1007 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 RCN3Q96D15 328 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 ARL5BQ96KC2 179 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 FAM107BQ9H098 131 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 TMED7Q9Y3B3 224 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 HDGFL3Q9Y3E1 203 aa17.27■□□□□ 0.36
SS18-208ENST00000577751 PRORSD1PA6NEY8 169 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 FRS3O43559 492 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 CD8BP10966 210 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 UQCRC1P31930 480 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 PCGF2P35227 344 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 PEX19P40855 299 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 DIO1P49895 249 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 COPZ1P61923 177 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 DMTNQ08495 405 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 VMACQ2NL98 169 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 GLIPR1L2Q4G1C9 344 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 FCRLAQ7L513 359 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 PIGWQ7Z7B1 504 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 LUZP2Q86TE4 346 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 BHLHE22Q8NFJ8 381 aaPredicted RBP17.26■□□□□ 0.35
SS18-208ENST00000577751 ZNF583Q96ND8 569 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 GP6Q9HCN6 339 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 FAM53CQ9NYF3 392 aa17.26■□□□□ 0.35
SS18-208ENST00000577751 TMEM72A0PK05 275 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 M0QX08 132 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 PMS2P2O95744 297 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 ENPP1P22413 925 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 PCYT1AP49585 367 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 SIRPAP78324 504 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 RNPS1Q15287 305 aaKnown RBP17.25■□□□□ 0.35
SS18-208ENST00000577751 ARMC8Q8IUR7 673 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 SLC43A2Q8N370 569 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 LSMEM1Q8N8F7 131 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 OR6K3Q8NGY3 331 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 ABHD3Q8WU67 409 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 C14orf79Q96F83 325 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 REXO5Q96IC2 774 aaKnown RBP17.25■□□□□ 0.35
SS18-208ENST00000577751 ECSITQ9BQ95 431 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 GPATCH1Q9BRR8 931 aaKnown RBP17.25■□□□□ 0.35
SS18-208ENST00000577751 RBM24Q9BX46 236 aaKnown RBP17.25■□□□□ 0.35
SS18-208ENST00000577751 OR11A1Q9GZK7 315 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 SLC24A3Q9HC58 644 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 PLSCR4Q9NRQ2 329 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 CLEC4AQ9UMR7 237 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 TRAPPC4Q9Y296 219 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 EMC9Q9Y3B6 208 aa17.25■□□□□ 0.35
SS18-208ENST00000577751 SULT2B1O00204 365 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 SMAD9O15198 467 aaKnown RBP17.24■□□□□ 0.35
SS18-208ENST00000577751 DNPH1O43598 174 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 SMNDC1O75940 238 aaKnown RBP eCLIP17.24■□□□□ 0.35
SS18-208ENST00000577751 PRKD3O94806 890 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 PLGP00747 810 aaPredicted RBP17.24■□□□□ 0.35
SS18-208ENST00000577751 TFPIP10646 304 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 CCNA2P20248 432 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 CSNK2A1P68400 391 aaPredicted RBP17.24■□□□□ 0.35
SS18-208ENST00000577751 HOXC5Q00444 222 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 SORDQ00796 357 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 MYBPHQ13203 477 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 DUSP7Q16829 419 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 INTS11Q5TA45 600 aaKnown RBP17.24■□□□□ 0.35
SS18-208ENST00000577751 ZNF474Q6S9Z5 364 aaPredicted RBP17.24■□□□□ 0.35
SS18-208ENST00000577751 CCDC80Q76M96 950 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 PATL1Q86TB9 770 aaKnown RBP17.24■□□□□ 0.35
SS18-208ENST00000577751 KIF18BQ86Y91 864 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 CADM2Q8N3J6 435 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 C3orf49Q96BT1 292 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 DDIT4LQ96D03 193 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 PIF1Q9H611 641 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 EVA1AQ9H8M9 152 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 GALNT8Q9NY28 637 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 KCNN3Q9UGI6 736 aa17.24■□□□□ 0.35
SS18-208ENST00000577751 ING1Q9UK53 422 aaPredicted RBP17.24■□□□□ 0.35
SS18-208ENST00000577751 CENPEQ02224 2701 aa17.23■□□□□ 0.35
SS18-208ENST00000577751 IGHV3-15A0A0B4J1V0 119 aa17.23■□□□□ 0.35
SS18-208ENST00000577751 ZC3H12DA2A288 527 aaKnown RBP17.23■□□□□ 0.35
SS18-208ENST00000577751 CYTIPO60759 359 aa17.23■□□□□ 0.35
SS18-208ENST00000577751 LGI1O95970 557 aa17.23■□□□□ 0.35
SS18-208ENST00000577751 KLK2P20151 261 aa17.23■□□□□ 0.35
SS18-208ENST00000577751 CXCR1P25024 350 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms