RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CCSO14618 274 aa5□□□□□ -1.61
VPS53-219ENST00000576019 TSPAN2O60636 221 aa5□□□□□ -1.61
VPS53-219ENST00000576019 CTSVO60911 334 aa5□□□□□ -1.61
VPS53-219ENST00000576019 MTRF1O75570 445 aaKnown RBP5□□□□□ -1.61
VPS53-219ENST00000576019 KRT33AO76009 404 aa5□□□□□ -1.61
VPS53-219ENST00000576019 FHP07954 510 aa5□□□□□ -1.61
VPS53-219ENST00000576019 ERVK-10P10266 1014 aa5□□□□□ -1.61
VPS53-219ENST00000576019 POU2F1P14859 743 aa5□□□□□ -1.61
VPS53-219ENST00000576019 SSR1P43307 286 aaKnown RBP5□□□□□ -1.61
VPS53-219ENST00000576019 NDST1P52848 882 aa5□□□□□ -1.61
VPS53-219ENST00000576019 DCDC1P59894 354 aa5□□□□□ -1.61
VPS53-219ENST00000576019 KRTAP10-9P60411 292 aa5□□□□□ -1.61
VPS53-219ENST00000576019 NOP14P78316 857 aaKnown RBP5□□□□□ -1.61
VPS53-219ENST00000576019 ZP4Q12836 540 aa5□□□□□ -1.61
VPS53-219ENST00000576019 MERTKQ12866 999 aa5□□□□□ -1.61
VPS53-219ENST00000576019 SRSF6Q13247 344 aaKnown RBP5□□□□□ -1.61
VPS53-219ENST00000576019 NFATC4Q14934 902 aa5□□□□□ -1.61
VPS53-219ENST00000576019 KIR2DS3Q14952 304 aa5□□□□□ -1.61
VPS53-219ENST00000576019 SIRPB2Q5JXA9 342 aa5□□□□□ -1.61
VPS53-219ENST00000576019 BEND6Q5SZJ8 279 aaPredicted RBP5□□□□□ -1.61
VPS53-219ENST00000576019 IRAK1BP1Q5VVH5 260 aa5□□□□□ -1.61
VPS53-219ENST00000576019 RAET1LQ5VY80 246 aa5□□□□□ -1.61
VPS53-219ENST00000576019 OR4F3Q6IEY1 312 aa5□□□□□ -1.61
VPS53-219ENST00000576019 PNCKQ6P2M8 343 aa5□□□□□ -1.61
VPS53-219ENST00000576019 SHC4Q6S5L8 630 aa5□□□□□ -1.61
VPS53-219ENST00000576019 METTL7BQ6UX53 244 aa5□□□□□ -1.61
VPS53-219ENST00000576019 ZNF730Q6ZMV8 503 aa5□□□□□ -1.61
VPS53-219ENST00000576019 FCRLAQ7L513 359 aa5□□□□□ -1.61
VPS53-219ENST00000576019 NLRP9Q7RTR0 991 aa5□□□□□ -1.61
VPS53-219ENST00000576019 LUZP2Q86TE4 346 aa5□□□□□ -1.61
VPS53-219ENST00000576019 TGIF2LXQ8IUE1 241 aa5□□□□□ -1.61
VPS53-219ENST00000576019 FBXL14Q8N1E6 418 aa5□□□□□ -1.61
VPS53-219ENST00000576019 ALLCQ8N6M5 410 aa5□□□□□ -1.61
VPS53-219ENST00000576019 PRR26Q8N8Z3 221 aa5□□□□□ -1.61
VPS53-219ENST00000576019 ZNF114Q8NC26 417 aa5□□□□□ -1.61
VPS53-219ENST00000576019 FAM83FQ8NEG4 500 aaPredicted RBP5□□□□□ -1.61
VPS53-219ENST00000576019 OR5M9Q8NGP3 310 aa5□□□□□ -1.61
VPS53-219ENST00000576019 LILRB4Q8NHJ6 448 aa5□□□□□ -1.61
VPS53-219ENST00000576019 MPLKIPQ8TAP9 179 aa5□□□□□ -1.61
VPS53-219ENST00000576019 ADIPOR1Q96A54 375 aa5□□□□□ -1.61
VPS53-219ENST00000576019 TMIGD2Q96BF3 282 aa5□□□□□ -1.61
VPS53-219ENST00000576019 B3GALT6Q96L58 329 aa5□□□□□ -1.61
VPS53-219ENST00000576019 TAAR1Q96RJ0 339 aa5□□□□□ -1.61
VPS53-219ENST00000576019 CPVLQ9H3G5 476 aa5□□□□□ -1.61
VPS53-219ENST00000576019 GPN2Q9H9Y4 310 aaPredicted RBP5□□□□□ -1.61
VPS53-219ENST00000576019 RNF6Q9Y252 685 aa5□□□□□ -1.61
VPS53-219ENST00000576019 ANK1P16157 1881 aa5□□□□□ -1.61
VPS53-219ENST00000576019 PRRC2AP48634 2157 aaKnown RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 FAM74A7A6NL05 159 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 NPIPB8E9PQR5 432 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 LMO7DNF2Z398 122 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 NDUFS8O00217 210 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 NMT2O60551 498 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 LDOC1O95751 146 aaPredicted RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 FCER2P06734 321 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 GSTA1P08263 222 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 ADORA3P0DMS8 318 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 CHMLP26374 656 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 HOXD3P31249 432 aaPredicted RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 LONP1P36776 959 aaKnown RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 HPCAL1P37235 193 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 BRCC3P46736 316 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 CSNK1EP49674 416 aaKnown RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 CDKL1Q00532 357 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 GANABQ14697 944 aaKnown RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 RBMS2Q15434 407 aaKnown RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 KLHL40Q2TBA0 621 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 FAM74A3Q4VXF1 159 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 DDI2Q5TDH0 399 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 C8orf82Q6P1X6 216 aaPredicted RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 CENPQQ7L2Z9 268 aaPredicted RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 NET1Q7Z628 596 aaPredicted RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 SPRED1Q7Z699 444 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 TMEM17Q86X19 198 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 CLEC4FQ8N1N0 589 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 CHDHQ8NE62 594 aaPredicted RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 SDR42E1Q8WUS8 393 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 TMED6Q8WW62 240 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 LIPHQ8WWY8 451 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 DNASE2BQ8WZ79 361 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 NDRG1Q92597 394 aaKnown RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 RTP4Q96DX8 246 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 ELMO2Q96JJ3 720 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 COPS8Q99627 209 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 IL12RB2Q99665 862 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 TTYH2Q9BSA4 534 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 APOOQ9BUR5 198 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 RBM38Q9H0Z9 239 aaKnown RBP4.99□□□□□ -1.61
VPS53-219ENST00000576019 DNTTIP1Q9H147 329 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 ALG9Q9H6U8 611 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 SYNDIG1Q9H7V2 258 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 KLHL28Q9NXS3 571 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 GHRLQ9UBU3 117 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 MAN1B1Q9UKM7 699 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 CA5BQ9Y2D0 317 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 N6AMT1Q9Y5N5 214 aa4.99□□□□□ -1.61
VPS53-219ENST00000576019 DOCK5Q9H7D0 1870 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 BAZ2AQ9UIF9 1905 aaKnown RBP4.98□□□□□ -1.61
VPS53-219ENST00000576019 IGHV1OR15-9A0A0B4J2B8 117 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 A0A1W2PNU3 283 aaPredicted RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms