RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 IL17RCQ8NAC3 791 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 INO80EQ8NBZ0 244 aaPredicted RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 CHST14Q8NCH0 376 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 CAMK1GQ96NX5 476 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 PITHD1Q9GZP4 211 aaPredicted RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 SYNPO2LQ9H987 977 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 NEUROD4Q9HD90 331 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 HINT3Q9NQE9 182 aaKnown RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 NOP16Q9Y3C1 178 aaKnown RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 PLXND1Q9Y4D7 1925 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 IGLV3-16A0A075B6K0 115 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 A0A1W2PRQ8 180 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 GLOD5A6NK44 160 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 RIIAD1A6NNX1 92 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 UGDHO60701 494 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 IFNA4P05014 189 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 C1SP09871 688 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 UBBP0CG47 229 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 UBCP0CG48 685 aaKnown RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 HOXB1P14653 301 aaPredicted RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 ATF1P18846 271 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 DCTDP32321 178 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 CTSCP53634 463 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 TAS2R43P59537 309 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 RPS27AP62979 156 aaKnown RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 UBA52P62987 128 aaKnown RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 ZNF77Q15935 545 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 PGGHGQ32M88 737 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 PCGF3Q3KNV8 242 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 C9orf64Q5T6V5 341 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 CD200R1LQ6Q8B3 271 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 C12orf40Q86WS4 652 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 MCATQ8IVS2 390 aaKnown RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 GID4Q8IVV7 300 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 OR6S1Q8NH40 331 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 STOML3Q8TAV4 291 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 SMIM4Q8WVI0 70 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 NR4A3Q92570 626 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 RGMAQ96B86 450 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 AHCYL2Q96HN2 611 aaKnown RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 GPA33Q99795 319 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 EFCAB11Q9BUY7 163 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 CHMP1AQ9HD42 196 aaPredicted RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 MIOXQ9UGB7 285 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 LOC100509620A0A075B734 347 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 ZNF879B4DU55 563 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 H0YIV9 168 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 ABCD4O14678 606 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 PAPLNO95428 1278 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 GYPBP06028 91 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 GTF2F2P13984 249 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 NTSP30990 170 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 METAP1P53582 386 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 PCBP3P57721 371 aaKnown RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 OR12D2P58182 307 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 HYAL4Q2M3T9 481 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 PABPC1L2AQ5JQF8 200 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 TMEM240Q5SV17 173 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 PRAMEF17Q5VTA0 474 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 GLDNQ6ZMI3 551 aaPredicted RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 FRRS1Q6ZNA5 592 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 NR2C2APQ86WQ0 139 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 TRAPPC5Q8IUR0 188 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 SIRT6Q8N6T7 355 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 MRPL43Q8N983 215 aaKnown RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 OR4D11Q8NGI4 311 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 OR5P2Q8WZ92 322 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 ZNF707Q96C28 371 aaPredicted RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 WDR89Q96FK6 387 aaPredicted RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 PRRC1Q96M27 445 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 UBL7Q96S82 380 aaPredicted RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 C19orf43Q9BQ61 176 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 SLC25A32Q9H2D1 315 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 SLC38A1Q9H2H9 487 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 ESRP2Q9H6T0 727 aaKnown RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 TRPV4Q9HBA0 871 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 IL23AQ9NPF7 189 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 KCND3Q9UK17 655 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 DOCK8Q8NF50 2099 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 ARID1BQ8NFD5 2236 aaPredicted RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 PRICKLE3O43900 615 aaPredicted RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 CRYBA1P05813 215 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 AGTR1P30556 359 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 HTR1FP30939 366 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 CDK5Q00535 292 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 RBM39Q14498 530 aaKnown RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 TEAD2Q15562 447 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 TRAM1Q15629 374 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 MANEAQ5SRI9 462 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 B3GNTL1Q67FW5 361 aaPredicted RBP8.88□□□□□ -0.99
CCDC40-212ENST00000574799 NAXDQ8IW45 347 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 CMTM4Q8IZR5 234 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 ARIH2OSQ8N7S6 290 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 WDSUB1Q8N9V3 476 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 KREMEN2Q8NCW0 462 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 OR51L1Q8NGJ5 315 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 OR2A12Q8NGT7 310 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 SPPL3Q8TCT6 385 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 THAP4Q8WY91 577 aa8.88□□□□□ -0.99
CCDC40-212ENST00000574799 ORAI1Q96D31 301 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms