RNA–Protein interactions for RNA: ENST00000567944.1

HERPUD1-212, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 435 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-212ENST00000567944 NME3Q13232 169 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 EIF2B1Q14232 305 aaKnown RBP2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 SPCS2Q15005 226 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 RAB35Q15286 201 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 HSP90AA5PQ58FG0 334 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 AADACL4Q5VUY2 407 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 IL23RQ5VWK5 629 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 RSBN1Q5VWQ0 802 aaPredicted RBP2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 UFSP1Q6NVU6 142 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 TATDN1Q6P1N9 297 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 TMEM26Q6ZUK4 368 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 CENPQQ7L2Z9 268 aaPredicted RBP2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 PPP1R42Q7Z4L9 355 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 VASH2Q86V25 355 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 GRAMD2AQ8IUY3 354 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 C9orf40Q8IXQ3 194 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 C12orf56Q8IXR9 622 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 FAM9CQ8IZT9 166 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 DNAAF3Q8N9W5 541 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 MINDY2Q8NBR6 621 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 NFAM1Q8NET5 270 aaPredicted RBP2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 SLC13A3Q8WWT9 602 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 RAPGEF5Q92565 580 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 OR5M11Q96RB7 305 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 TSC22D3Q99576 134 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 SELENOSQ9BQE4 189 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 UPF3BQ9BZI7 483 aaKnown RBP2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 NT5C3AQ9H0P0 336 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 DPH5Q9H2P9 285 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 XKR8Q9H6D3 395 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 ZNF702PQ9H963 129 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 EXOSC3Q9NQT5 275 aaKnown RBP2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 POLE3Q9NRF9 147 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 AATFQ9NY61 560 aaKnown RBP eCLIP2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 ANAPC11Q9NYG5 84 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 COX16Q9P0S2 106 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 CLEC4AQ9UMR7 237 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 FKBP7Q9Y680 259 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 INSRP06213 1382 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 PALLDQ8WX93 1383 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 USP47Q96K76 1375 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 KIF20BQ96Q89 1820 aa2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 RANBP2P49792 3224 aaKnown RBP2.7□□□□□ -1.98
HERPUD1-212ENST00000567944 MYO3BQ8WXR4 1341 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 UBR2Q8IWV8 1755 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 EDC4Q6P2E9 1401 aaKnown RBP2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 HTTP42858 3142 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 PIEZO1Q92508 2521 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 COL6A3P12111 3177 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 IGLV8-61A0A075B6I0 122 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 GOLGA8QA0A0J9YX86 632 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 GOLGA8OA6NCC3 632 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 RNF222A6NCQ9 220 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 SYCE1LA8MT33 242 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 GOLGA8NF8WBI6 632 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 SGK494L7N484 410 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 AP3B1O00203 1094 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 PFDN1O60925 122 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 NOL4O94818 638 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 NDUFA7O95182 113 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 NPPAP01160 153 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 APOEP02649 317 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 ALPPP05187 535 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 ALPPL2P10696 532 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 EIF2S2P20042 333 aaKnown RBP2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 PTPN6P29350 595 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 ACVR1BP36896 505 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 KRT6CP48668 564 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 HSPA13P48723 471 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 STX17P56962 302 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 VBP1P61758 197 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 NOP14P78316 857 aaKnown RBP2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 CD47Q08722 323 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 SCRN3Q0VDG4 424 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 DNAJC3Q13217 504 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 SNX1Q13596 522 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 CUL1Q13616 776 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 SERTAD2Q14140 314 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 DPYSL3Q14195 570 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 PDK1Q15118 436 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 GLYR1Q49A26 553 aaPredicted RBP2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 FBXO48Q5FWF7 155 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 ZNF658Q5TYW1 1059 aaPredicted RBP2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 DMKNQ6E0U4 476 aaPredicted RBP2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 ERICH5Q6P6B1 374 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 OLFM4Q6UX06 510 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 NET1Q7Z628 596 aaPredicted RBP2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 COMTD1Q86VU5 262 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 APOBEC3FQ8IUX4 373 aaKnown RBP2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 ELMOD2Q8IZ81 293 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 CENPSQ8N2Z9 138 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 Q8N7P7 452 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 OR8K1Q8NGG5 319 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 DDI1Q8WTU0 396 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 ARNTL2Q8WYA1 636 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 KIFAP3Q92845 792 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 C18orf25Q96B23 403 aaPredicted RBP2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 OPTNQ96CV9 577 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 ZIM3Q96PE6 472 aa2.69□□□□□ -1.98
HERPUD1-212ENST00000567944 TSGA13Q96PP4 275 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms