RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 HOXC12P31275 282 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 OR3A2P47893 321 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 MVDP53602 400 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 NR1H2P55055 460 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 OR2B6P58173 313 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 DSTNP60981 165 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 ITGADQ13349 1161 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 P2RY6Q15077 328 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 GTDC1Q4AE62 458 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 MRPL2Q5T653 305 aaKnown RBP18.4■□□□□ 0.54
CLN3-219ENST00000565778 ZNF100Q8IYN0 542 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 GOLGA6L1Q8N7Z2 621 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 OR52P1PQ8NH57 321 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 KISS1RQ969F8 398 aaPredicted RBP18.4■□□□□ 0.54
CLN3-219ENST00000565778 AURKBQ96GD4 344 aaPredicted RBP18.4■□□□□ 0.54
CLN3-219ENST00000565778 CCL19Q99731 98 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 OR11A1Q9GZK7 315 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 TCF7L2Q9NQB0 619 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 PRSS50Q9UI38 385 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 ZNF232Q9UNY5 417 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 TMED7Q9Y3B3 224 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 TMEM247A6NEH6 219 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 CFAP73A6NFT4 308 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 ARHGEF9O43307 516 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 PMS2P2O95744 297 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 BCHEP06276 602 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 TFPTP0C1Z6 253 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 RPS4Y1P22090 263 aaKnown RBP18.39■□□□□ 0.53
CLN3-219ENST00000565778 TACR3P29371 465 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 IDH3AP50213 366 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 POLR2HP52434 150 aaKnown RBP18.39■□□□□ 0.53
CLN3-219ENST00000565778 CRISP3P54108 245 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 MAPK11Q15759 364 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 Q6ZT83 130 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 GALNT5Q7Z7M9 940 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 VRK2Q86Y07 508 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 P3H2Q8IVL5 708 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 ZNF440Q8IYI8 595 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 WFDC11Q8NEX6 87 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 SLC38A5Q8WUX1 472 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 HSD17B8Q92506 261 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 GTF2H4Q92759 462 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 DDIT4LQ96D03 193 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 PIP5K1AQ99755 562 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 RLIMQ9NVW2 624 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 THUMPD1Q9NXG2 353 aaKnown RBP18.39■□□□□ 0.53
CLN3-219ENST00000565778 EMC3Q9P0I2 261 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 OSGIN1Q9UJX0 560 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 PCDHB14Q9Y5E9 798 aa18.39■□□□□ 0.53
CLN3-219ENST00000565778 PLAUP00749 431 aa18.38■□□□□ 0.53
CLN3-219ENST00000565778 SLC1A3P43003 542 aa18.38■□□□□ 0.53
CLN3-219ENST00000565778 EPS8Q12929 822 aa18.38■□□□□ 0.53
CLN3-219ENST00000565778 CAPRIN1Q14444 709 aaKnown RBP18.38■□□□□ 0.53
CLN3-219ENST00000565778 TTMPQ5BVD1 217 aa18.38■□□□□ 0.53
CLN3-219ENST00000565778 SHEQ5VZ18 495 aa18.38■□□□□ 0.53
CLN3-219ENST00000565778 SLC2A7Q6PXP3 512 aa18.38■□□□□ 0.53
CLN3-219ENST00000565778 ZNF704Q6ZNC4 412 aaPredicted RBP18.38■□□□□ 0.53
CLN3-219ENST00000565778 C20orf204Q6ZNR8 217 aa18.38■□□□□ 0.53
CLN3-219ENST00000565778 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.38■□□□□ 0.53
CLN3-219ENST00000565778 USB1Q9BQ65 265 aaKnown RBP18.38■□□□□ 0.53
CLN3-219ENST00000565778 CACYBPQ9HB71 228 aaKnown RBP18.38■□□□□ 0.53
CLN3-219ENST00000565778 NGBQ9NPG2 151 aa18.38■□□□□ 0.53
CLN3-219ENST00000565778 TMEM181Q9P2C4 612 aa18.38■□□□□ 0.53
CLN3-219ENST00000565778 TRAPPC4Q9Y296 219 aa18.38■□□□□ 0.53
CLN3-219ENST00000565778 A0A0G2JPF8 293 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 TMEM72A0PK05 275 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 HNRNPCL2B2RXH8 293 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 HNRNPCL3B7ZW38 293 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 CLIC1O00299 241 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 FAAHO00519 579 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 HNRNPCL1O60812 293 aaKnown RBP18.37■□□□□ 0.53
CLN3-219ENST00000565778 LYZL6O75951 148 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 GKN3PP0CG01 181 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 HNRNPCL4P0DMR1 293 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 LARS2Q15031 903 aaKnown RBP18.37■□□□□ 0.53
CLN3-219ENST00000565778 PDK3Q15120 406 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 RGNQ15493 299 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 LIN52Q52LA3 116 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 BHLHA15Q7RTS1 189 aaPredicted RBP18.37■□□□□ 0.53
CLN3-219ENST00000565778 HDXQ7Z353 690 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 CCDC103Q8IW40 242 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 UBE2J2Q8N2K1 259 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 EBF4Q9BQW3 602 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 CCDC28BQ9BUN5 200 aa18.37■□□□□ 0.53
CLN3-219ENST00000565778 PAIP1Q9H074 479 aaKnown RBP18.37■□□□□ 0.53
CLN3-219ENST00000565778 NOSIPQ9Y314 301 aaKnown RBP18.37■□□□□ 0.53
CLN3-219ENST00000565778 CDHR4A6H8M9 788 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 GPR171O14626 319 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 ZNF208O43345 1280 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 DNPH1O43598 174 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 FOSL1P15407 271 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 CXCR1P25024 350 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 MAP2K6P52564 334 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 AQP5P55064 265 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 TAB1Q15750 504 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 RPS26P11Q5JNZ5 115 aaPredicted RBP18.36■□□□□ 0.53
CLN3-219ENST00000565778 ABLIM2Q6H8Q1 611 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 PIGXQ8TBF5 258 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 TMEM19Q96HH6 336 aa18.36■□□□□ 0.53
CLN3-219ENST00000565778 NAA11Q9BSU3 229 aaPredicted RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms